View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_38 (Length: 235)
Name: NF1346_low_38
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 36676545 - 36676673
Alignment:
| Q |
100 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
199 |
Q |
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| T |
36676545 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
36676644 |
T |
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| Q |
200 |
caagcatgggaactatatttttgtctctg |
228 |
Q |
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| T |
36676645 |
caagcatgggaactatatttttgtgtctg |
36676673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 36673790 - 36673911
Alignment:
| Q |
100 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
36673790 |
cttatgacttcactttccgaaggatgcaaccatttggaaagccttccatttgacatgtatgcatatgctaaaacctgttcctttcctttaatgcagaacc |
36673889 |
T |
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| Q |
200 |
caagcatgggaactatattttt |
221 |
Q |
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|||||| ||||||||||||||| |
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| T |
36673890 |
caagcaggggaactatattttt |
36673911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 36684221 - 36684339
Alignment:
| Q |
103 |
atgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaa |
202 |
Q |
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||||||||||||| |||||| | |||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||| |||| |||| |
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| T |
36684221 |
atgacttcacttttcaaagggtacaaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaa |
36684320 |
T |
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| Q |
203 |
gcatgggaactatattttt |
221 |
Q |
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||||||||||||||||||| |
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| T |
36684321 |
gcatgggaactatattttt |
36684339 |
T |
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