View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_4 (Length: 511)
Name: NF1346_low_4
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_4 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 81 - 417
Target Start/End: Complemental strand, 2411785 - 2411449
Alignment:
| Q |
81 |
caccacagaggatcttcattgccttcactatcagttcatccacagacaataggatgtgatggaggtttcaatccgtttttccattcaatgaatcagaacc |
180 |
Q |
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| T |
2411785 |
caccacagaggatcttcattgccttcactatcagttcatccacagacaataggatgtgatggaggtttcaatccgtttttccattcaatgaatcagaacc |
2411686 |
T |
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| Q |
181 |
ctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttccggatgaccgtggtgattatagtcattcagaaccagcaacttacat |
280 |
Q |
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| T |
2411685 |
ctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttccggatgaccgtggtgattatagtcattcagaaccagcaacttacat |
2411586 |
T |
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| Q |
281 |
caatggtgggattgttggacctttagcgtactttgctggtaacaattaatgttagatttgactttgatagcaaggttaaaaacagaacactgctatcaaa |
380 |
Q |
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| T |
2411585 |
caatggtgggattgttggacctttagcgtactttgctggtaacaattaatgttagatttgactttgatagcaaggttaaaaacagaaatctgctatcaaa |
2411486 |
T |
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| Q |
381 |
gtgtagatactatctcatctctacccaacaaagggat |
417 |
Q |
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| T |
2411485 |
gtgtagatactatctcatctctacccaacaaagggat |
2411449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 81 - 417
Target Start/End: Complemental strand, 14170 - 13827
Alignment:
| Q |
81 |
caccacagaggatcttcattgccttcactatcagttcatccacagacaataggatgtgatggaggtttcaatccgtttttccattcaatgaatcagaacc |
180 |
Q |
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| T |
14170 |
caccacagaggatcttcattgccttcactatcagttcatccgcagacaataggatgtgatggaggtttcaatccgtttttccattcaatgaatcagaacc |
14071 |
T |
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| Q |
181 |
ctaatatattggttggagccatagttggaggtccaaaccaaaacgatggatttccggatgaccgtggtgattata----gtcattcagaaccagcaactt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||| |||||| |||||||||||||| |
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| T |
14070 |
ctaatatattggttggagccatagttggaggtccaaaccagaacgacggatttccggatgatcgcggtgattatagtcagtcattgagaaccagcaactt |
13971 |
T |
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| Q |
277 |
acatcaatggtgggattgttggacctttagcgtac-tttgctggtaacaattaatgttaga-tttgactttgatagcaaggtt-aaaaacagaacactgc |
373 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
13970 |
acatcaatggtgggattgttggacctttagcgtacttttgccggtagcaattaatgttagattttgactttgatagcaaggttaaaaaacagaacactgc |
13871 |
T |
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| Q |
374 |
tatcaaagtgtagatactatctcatctctacccaacaaagggat |
417 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
13870 |
tatcgaagtgtagatattgtctcatctctacccaacaaagggat |
13827 |
T |
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