View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_43 (Length: 214)
Name: NF1346_low_43
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 31069076 - 31069137
Alignment:
| Q |
27 |
catttacccaaatctcaccccttttcattaaaaatccttttcaacccatttgttataatttc |
88 |
Q |
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| T |
31069076 |
catttacccaaatctcaccccttttcattaaaaacccttttcaacccatttgttataatttc |
31069137 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 31069196 - 31069226
Alignment:
| Q |
147 |
cactagatctcaatatcgaccaaacaataat |
177 |
Q |
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| T |
31069196 |
cactagatctcaatatcgaccaaacaataat |
31069226 |
T |
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