View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13470_low_2 (Length: 309)
Name: NF13470_low_2
Description: NF13470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13470_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 3682895 - 3683118
Alignment:
| Q |
19 |
aagagattaagacaaattaagtaataaataaataacaagcattcatttatcataacttctcataagaatgcactaaataatccgaagcttagtcgcgaga |
118 |
Q |
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| T |
3682895 |
aagagattaagacaaattaagtaataaataaataacaagtattcaattatcataacttctcttaagaatgcacta-----tctgaagtttagtcgcgaaa |
3682989 |
T |
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| Q |
119 |
tattacaaaactagaatccaatccatttactactcgagttcgattgctttgtaaatatgaaatagtgaatac--nnnnnnnntgagattaagttgaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||| |
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| T |
3682990 |
tattacaaaactagaatccaatccatttaccactagagtttgattgctttgtaaatatgaaatagtgaatacgaaaaaaaaaagggattaagttaaaaaa |
3683089 |
T |
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| Q |
217 |
taaattaagaagttgatcatcacaatctc |
245 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3683090 |
taaattaagaagttgatcatcacaatctc |
3683118 |
T |
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