View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13471_high_1_N (Length: 360)
Name: NF13471_high_1_N
Description: NF13471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13471_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 190 - 349
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
190 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
289 |
Q |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
290 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccaccacaggttc |
349 |
Q |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 5051563 - 5051458
Alignment:
| Q |
30 |
ctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat-aaatcatccttatattcgagaattgttgga |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5051563 |
ctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcatccttatattcgagaattgttgga |
5051464 |
T |
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| Q |
129 |
ttttca |
134 |
Q |
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|||||| |
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| T |
5051463 |
ttttca |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 38 - 349
Target Start/End: Original strand, 51273812 - 51274120
Alignment:
| Q |
38 |
caaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaa |
135 |
Q |
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| T |
51273812 |
caaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaa |
51273911 |
T |
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| Q |
136 |
atggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagct |
235 |
Q |
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| T |
51273912 |
atggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgcc |
51274011 |
T |
|
| Q |
236 |
ggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttc |
334 |
Q |
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|| ||||||||| |||||||||||| ||||||| |||||||| ||||| |||||||| ||||||||| | | || |||||| |||||||||||| |
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| T |
51274012 |
gggaaccggtca-caataaacgtgaccgtgtactagaaggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttc |
51274105 |
T |
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| Q |
335 |
aaccaccacaggttc |
349 |
Q |
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||||| ||||||||| |
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| T |
51274106 |
aaccatcacaggttc |
51274120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 14907837 - 14908035
Alignment:
| Q |
34 |
aaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagataa-atcatc-cttatattcgagaattgttggattt |
131 |
Q |
| |
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||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| || | || ||||||||||||||||||||||| | |
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| T |
14907837 |
aaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaaaataaaatgtcttatattcgagaattgttggatct |
14907936 |
T |
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| Q |
132 |
tcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctcca |
230 |
Q |
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|| ||||||||| |||| ||||||||||||| || | |||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||| |
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| T |
14907937 |
tccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
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