View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13471_high_2 (Length: 346)
Name: NF13471_high_2
Description: NF13471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13471_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 32006193 - 32006501
Alignment:
| Q |
7 |
tcgaagaatatcggaataagagagaggagagcaaaatcggnnnnnnntctccattcaatatcatcgacggcgggatggcgagaacaccaccgaagaactc |
106 |
Q |
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| T |
32006193 |
tcgaacaagatcggaataagagagaggagagcaaaatcggaaaaaa-tctccattcaatatcattgacggcgggatggcgagaacaccgccgaagaactc |
32006291 |
T |
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| Q |
107 |
aatcgttttatgatactgcaactgtttcgcacgacaaatacaacaagggcgacgaccaagaccgaaagcctgattgaaagtgaatctggacaagaaatgg |
206 |
Q |
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| T |
32006292 |
aatcattttatgatactgcaactgtttcgcacgacaaatacaacaagggcgatggccaagaccgaaagcctgattgaaagtgaatctggacaagaaatgg |
32006391 |
T |
|
| Q |
207 |
gatgccatggagcttaccactggacaagaaagggaatctcgacgaaattaaaactgaagcttctccgattaaaatgcagcttctttccttttaagaagaa |
306 |
Q |
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|||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32006392 |
gatgccatggagcttatcactgaacgagaaagtgaatctcgacgaaattaaaactgaagcttctccgattaaaatgcagcttctttcctttgaagaagaa |
32006491 |
T |
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| Q |
307 |
gcaacaaaag |
316 |
Q |
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||| |||||| |
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| T |
32006492 |
gcagcaaaag |
32006501 |
T |
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