View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13471_high_6 (Length: 317)
Name: NF13471_high_6
Description: NF13471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13471_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 38 - 315
Target Start/End: Complemental strand, 6256218 - 6255938
Alignment:
| Q |
38 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaa |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6256218 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagctatccagaagcaacttcaaaacacgctagcaagcctcccaaacacaa |
6256119 |
T |
|
| Q |
138 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctatt---ttttcttatt |
234 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
6256118 |
caccaaaccgcaactgcagtggcatcactgaaaaactgcaactctgcataggactgttgtcaaacacagtagcacataaaatctatttttttttcttatt |
6256019 |
T |
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| Q |
235 |
cttcaagttcttattctctgtttgttgtctgacatatacatttccttgagaagcatccatgtttgaccatttctcacattg |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6256018 |
cttcaagttcgtattctctgtttgttgtctgacatataaatttccttgagaagcatccatgtttgaccatttctcacattg |
6255938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 38 - 313
Target Start/End: Original strand, 51207615 - 51207888
Alignment:
| Q |
38 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaa |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51207615 |
cccctggaaacctgctaccttaacataacagaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagagggcctcccaaacacaa |
51207714 |
T |
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| Q |
138 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattctt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
51207715 |
caccaaaccgcaactgcagtggcatcacagaaaaactgcaactttgcacaggactgctgttaaacacaacaacacataaaatctattttttcttattctt |
51207814 |
T |
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| Q |
238 |
caagttcttattctctgtttgttgtctgacatatacatttccttgagaagcatccatgtttgaccatttctcacat |
313 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||||| |
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| T |
51207815 |
caagttcttattctctgtttgt--tctagcatataaatttccttgagaagcatccatgcttgagcatttctcacat |
51207888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 67 - 317
Target Start/End: Original strand, 43430057 - 43430307
Alignment:
| Q |
67 |
agaaaccaaaatagcaataaaagccagccagaagcaactccaaaacacgctagcaagcctcccaaacacaacaccaaaccgcaactgcagtggcatcaca |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
43430057 |
agaaaccaaaatagcaataaaagccagccagaagcaactccgaaacacgctagcaagcctcccaaacacaacaccaaatcacaactgcagtggcatcacg |
43430156 |
T |
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| Q |
167 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagtagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctga |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43430157 |
gaaaaactgcaactctgcacaggactgctgtcaaacacagcagcacataaaatctattttttcttattcttcaagttcttattctctgtttgttgtctag |
43430256 |
T |
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| Q |
267 |
catatacatttccttgagaagcatccatgtttgaccatttctcacattgcc |
317 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
43430257 |
catataaatttccttgagaagcatccatgcttgaccatttcacacattgcc |
43430307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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