View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13471_low_1 (Length: 369)
Name: NF13471_low_1
Description: NF13471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13471_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 54 - 363
Target Start/End: Complemental strand, 32006501 - 32006193
Alignment:
| Q |
54 |
cttttgttgcttcttcttaaaaggaaagaagctgcattttaatcggagaagcttcagttttaatttcgtcgagattccctttcttgtccagtggtaagct |
153 |
Q |
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| T |
32006501 |
cttttgctgcttcttcttcaaaggaaagaagctgcattttaatcggagaagcttcagttttaatttcgtcgagattcactttctcgttcagtgataagct |
32006402 |
T |
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| Q |
154 |
ccatggcatcccatttcttgtccagattcactttcaatcaggctttcggtcttggccgtcgcccttgttgtatttgtcgtgcgaaacagttgcagtatca |
253 |
Q |
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| T |
32006401 |
ccatggcatcccatttcttgtccagattcactttcaatcaggctttcggtcttggccatcgcccttgttgtatttgtcgtgcgaaacagttgcagtatca |
32006302 |
T |
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| Q |
254 |
taaaacgattgagttcttcggtggtgttctcgccatcccgccgtcgatgatattgaatggagannnnnnnccgattttgctctcctctctcttattccga |
353 |
Q |
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| T |
32006301 |
taaaatgattgagttcttcggcggtgttctcgccatcccgccgtcaatgatattgaatggaga-ttttttccgattttgctctcctctctcttattccga |
32006203 |
T |
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| Q |
354 |
ttttcttcga |
363 |
Q |
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| T |
32006202 |
tcttgttcga |
32006193 |
T |
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