View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13472_high_2 (Length: 259)

Name: NF13472_high_2
Description: NF13472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13472_high_2
NF13472_high_2
[»] chr8 (28 HSPs)
chr8 (97-238)||(8410794-8410935)
chr8 (5-93)||(10007776-10007864)
chr8 (5-90)||(29968350-29968434)
chr8 (1-90)||(11287779-11287868)
chr8 (17-93)||(30335639-30335715)
chr8 (5-94)||(10006343-10006432)
chr8 (16-93)||(12351921-12351998)
chr8 (15-92)||(18979143-18979220)
chr8 (16-93)||(22221388-22221465)
chr8 (16-93)||(22227730-22227807)
chr8 (5-93)||(1823552-1823640)
chr8 (5-93)||(1857997-1858085)
chr8 (5-93)||(12353374-12353460)
chr8 (5-88)||(1824091-1824174)
chr8 (5-88)||(1858536-1858619)
chr8 (37-95)||(36249550-36249608)
chr8 (5-94)||(22220387-22220476)
chr8 (5-93)||(24122883-24122970)
chr8 (10-93)||(11283227-11283310)
chr8 (36-94)||(24483142-24483200)
chr8 (16-93)||(5513982-5514058)
chr8 (16-93)||(5514294-5514370)
chr8 (5-90)||(8389702-8389787)
chr8 (37-90)||(11282011-11282064)
chr8 (42-94)||(3819488-3819539)
chr8 (37-93)||(11456638-11456694)
chr8 (17-93)||(30336526-30336602)
chr8 (1-89)||(45112875-45112961)
[»] scaffold0320 (1 HSPs)
scaffold0320 (5-93)||(19488-19576)
[»] scaffold0302 (2 HSPs)
scaffold0302 (1-93)||(17470-17562)
scaffold0302 (15-95)||(18799-18879)
[»] chr5 (28 HSPs)
chr5 (1-94)||(1796053-1796146)
chr5 (16-93)||(33160310-33160387)
chr5 (17-93)||(16650880-16650956)
chr5 (5-93)||(18486915-18487003)
chr5 (5-93)||(40255685-40255773)
chr5 (16-94)||(22940646-22940724)
chr5 (1-90)||(20216772-20216861)
chr5 (16-93)||(25523069-25523146)
chr5 (5-90)||(28539833-28539917)
chr5 (5-93)||(36486501-36486589)
chr5 (10-93)||(19752912-19752994)
chr5 (16-97)||(25056405-25056486)
chr5 (15-93)||(25524150-25524229)
chr5 (5-91)||(36485302-36485388)
chr5 (1-94)||(20214195-20214287)
chr5 (10-93)||(19754148-19754232)
chr5 (17-93)||(28538676-28538752)
chr5 (15-93)||(18485138-18485216)
chr5 (16-90)||(24332916-24332990)
chr5 (33-93)||(5730441-5730502)
chr5 (159-240)||(20424871-20424952)
chr5 (16-93)||(33158098-33158175)
chr5 (10-65)||(2686419-2686474)
chr5 (35-94)||(41663768-41663827)
chr5 (159-240)||(12402285-12402366)
chr5 (5-90)||(42195137-42195220)
chr5 (33-93)||(5778877-5778937)
chr5 (17-61)||(7311622-7311666)
[»] chr2 (29 HSPs)
chr2 (1-93)||(36449778-36449870)
chr2 (5-90)||(7898694-7898779)
chr2 (1-90)||(36450930-36451018)
chr2 (17-93)||(7899907-7899983)
chr2 (10-94)||(18299372-18299456)
chr2 (1-93)||(18904367-18904459)
chr2 (5-93)||(38839242-38839330)
chr2 (1-93)||(13570566-13570658)
chr2 (1-93)||(16446154-16446246)
chr2 (17-93)||(38840518-38840594)
chr2 (17-93)||(41879237-41879313)
chr2 (11-93)||(18868924-18869006)
chr2 (5-93)||(11258824-11258912)
chr2 (17-93)||(23869560-23869635)
chr2 (15-93)||(22587977-22588054)
chr2 (1-90)||(8534586-8534673)
chr2 (33-93)||(11938829-11938889)
chr2 (15-94)||(41878091-41878172)
chr2 (10-93)||(32739623-32739706)
chr2 (15-93)||(22848191-22848269)
chr2 (10-76)||(24475241-24475307)
chr2 (37-93)||(1034514-1034570)
chr2 (17-93)||(18906012-18906088)
chr2 (15-93)||(11257622-11257699)
chr2 (11-61)||(13568004-13568054)
chr2 (16-93)||(18797246-18797324)
chr2 (16-93)||(802615-802691)
chr2 (16-65)||(24476868-24476917)
chr2 (37-93)||(26829333-26829389)
[»] chr1 (34 HSPs)
chr1 (16-94)||(36613928-36614006)
chr1 (5-95)||(51684364-51684454)
chr1 (5-93)||(11436042-11436130)
chr1 (5-109)||(52274952-52275056)
chr1 (15-93)||(39698563-39698641)
chr1 (5-90)||(50680335-50680419)
chr1 (5-93)||(24422800-24422888)
chr1 (11-94)||(50681623-50681706)
chr1 (5-94)||(39699780-39699868)
chr1 (5-93)||(11437212-11437300)
chr1 (15-90)||(37526900-37526975)
chr1 (20-94)||(39222501-39222576)
chr1 (5-99)||(24426088-24426182)
chr1 (16-90)||(39151934-39152008)
chr1 (16-94)||(45148580-45148657)
chr1 (159-240)||(20425002-20425083)
chr1 (16-93)||(35594217-35594293)
chr1 (37-93)||(21185208-21185264)
chr1 (13-93)||(23980487-23980567)
chr1 (17-93)||(36612853-36612928)
chr1 (10-93)||(35067020-35067103)
chr1 (16-90)||(39153140-39153214)
chr1 (16-93)||(7674528-7674603)
chr1 (16-93)||(14999285-14999361)
chr1 (17-90)||(45156052-45156125)
chr1 (16-93)||(45157233-45157309)
chr1 (33-93)||(52827347-52827407)
chr1 (36-94)||(41364828-41364885)
chr1 (16-90)||(45149995-45150068)
chr1 (44-93)||(11190385-11190434)
chr1 (33-90)||(52828111-52828168)
chr1 (37-93)||(21945708-21945763)
chr1 (10-70)||(40384748-40384808)
chr1 (17-61)||(43058817-43058861)
[»] scaffold0045 (1 HSPs)
scaffold0045 (17-94)||(49109-49186)
[»] chr7 (23 HSPs)
chr7 (5-93)||(22629483-22629574)
chr7 (1-94)||(48934912-48935005)
chr7 (1-93)||(11658379-11658471)
chr7 (1-90)||(11662560-11662649)
chr7 (5-94)||(18371423-18371512)
chr7 (5-93)||(7500455-7500542)
chr7 (5-69)||(18372470-18372534)
chr7 (15-93)||(7501875-7501953)
chr7 (33-93)||(3227635-3227695)
chr7 (17-93)||(22630477-22630553)
chr7 (33-93)||(31949322-31949382)
chr7 (15-93)||(769413-769491)
chr7 (5-94)||(31659621-31659711)
chr7 (33-93)||(17782594-17782654)
chr7 (15-98)||(43899443-43899524)
chr7 (18-94)||(47525393-47525469)
chr7 (33-92)||(3227109-3227167)
chr7 (33-91)||(17781663-17781721)
chr7 (15-93)||(47369781-47369859)
chr7 (36-93)||(31949846-31949903)
chr7 (17-61)||(34351524-34351568)
chr7 (33-93)||(127337-127396)
chr7 (21-93)||(20163585-20163657)
[»] chr6 (18 HSPs)
chr6 (5-93)||(14822360-14822448)
chr6 (5-93)||(10784592-10784681)
chr6 (16-93)||(16704521-16704598)
chr6 (15-93)||(7316317-7316395)
chr6 (5-93)||(14823588-14823677)
chr6 (5-90)||(1829616-1829701)
chr6 (5-92)||(12382724-12382811)
chr6 (43-93)||(1828739-1828789)
chr6 (16-94)||(7314879-7314956)
chr6 (16-93)||(27437828-27437905)
chr6 (33-93)||(8659265-8659325)
chr6 (33-93)||(8821873-8821933)
chr6 (42-93)||(27447963-27448014)
chr6 (33-94)||(8822834-8822895)
chr6 (33-93)||(3721612-3721672)
chr6 (17-93)||(6842308-6842384)
chr6 (44-88)||(29473082-29473126)
chr6 (18-90)||(34834605-34834677)
[»] chr4 (34 HSPs)
chr4 (16-80)||(21539095-21539159)
chr4 (1-93)||(1963196-1963288)
chr4 (15-90)||(8758860-8758935)
chr4 (1-94)||(1964450-1964543)
chr4 (1-93)||(17382993-17383084)
chr4 (1-93)||(17388220-17388311)
chr4 (5-93)||(31599789-31599877)
chr4 (17-91)||(19750600-19750673)
chr4 (17-91)||(19789133-19789206)
chr4 (33-94)||(10471429-10471490)
chr4 (5-90)||(35935546-35935631)
chr4 (16-93)||(49308051-49308127)
chr4 (17-93)||(1290223-1290299)
chr4 (10-90)||(33296227-33296306)
chr4 (10-93)||(52491625-52491708)
chr4 (15-93)||(8757675-8757752)
chr4 (16-90)||(12129626-12129700)
chr4 (16-94)||(31601009-31601087)
chr4 (9-94)||(1834118-1834203)
chr4 (16-93)||(1835126-1835203)
chr4 (16-93)||(26421646-26421722)
chr4 (5-93)||(13509372-13509459)
chr4 (16-90)||(37728589-37728662)
chr4 (33-93)||(48780248-48780308)
chr4 (45-98)||(25684929-25684982)
chr4 (45-93)||(10470546-10470594)
chr4 (33-93)||(25685863-25685923)
chr4 (17-93)||(50909273-50909348)
chr4 (42-96)||(51291421-51291475)
chr4 (12-93)||(3927666-3927747)
chr4 (33-93)||(5525360-5525419)
chr4 (33-93)||(5526167-5526226)
chr4 (45-93)||(20919584-20919632)
chr4 (10-90)||(55602379-55602458)
[»] chr3 (37 HSPs)
chr3 (15-90)||(7268850-7268924)
chr3 (12-95)||(46719939-46720022)
chr3 (5-90)||(7267647-7267731)
chr3 (1-93)||(53614819-53614910)
chr3 (5-93)||(54540803-54540891)
chr3 (1-93)||(55192004-55192095)
chr3 (2-93)||(51038800-51038891)
chr3 (16-93)||(19984849-19984926)
chr3 (17-93)||(7758402-7758478)
chr3 (157-205)||(19543733-19543781)
chr3 (16-93)||(19986094-19986173)
chr3 (1-93)||(22776821-22776913)
chr3 (5-93)||(29931226-29931314)
chr3 (5-93)||(29980380-29980468)
chr3 (5-93)||(54539755-54539843)
chr3 (15-89)||(24516464-24516538)
chr3 (35-93)||(47615591-47615649)
chr3 (16-93)||(29932723-29932799)
chr3 (16-93)||(29981877-29981953)
chr3 (5-94)||(47614184-47614273)
chr3 (33-94)||(51469971-51470032)
chr3 (5-92)||(8456479-8456565)
chr3 (16-93)||(12700175-12700250)
chr3 (16-94)||(52840628-52840706)
chr3 (10-90)||(34019163-34019241)
chr3 (5-61)||(534531-534587)
chr3 (33-93)||(5001200-5001260)
chr3 (11-71)||(11670406-11670466)
chr3 (17-94)||(535807-535884)
chr3 (10-93)||(12703518-12703600)
chr3 (12-69)||(34940207-34940264)
chr3 (33-90)||(47610621-47610678)
chr3 (1-94)||(51037535-51037627)
chr3 (33-93)||(5029724-5029783)
chr3 (5-93)||(46721233-46721321)
chr3 (33-93)||(47609697-47609757)
chr3 (46-90)||(53616070-53616114)
[»] scaffold0019 (2 HSPs)
scaffold0019 (10-92)||(61477-61559)
scaffold0019 (16-94)||(60089-60167)
[»] scaffold2034 (2 HSPs)
scaffold2034 (1-95)||(231-325)
scaffold2034 (1-72)||(987-1058)
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-93)||(5462-5539)
[»] scaffold0059 (2 HSPs)
scaffold0059 (16-92)||(4754-4829)
scaffold0059 (5-74)||(3694-3763)
[»] scaffold0003 (2 HSPs)
scaffold0003 (16-93)||(49457-49534)
scaffold0003 (42-93)||(39344-39395)
[»] scaffold1303 (1 HSPs)
scaffold1303 (16-93)||(1439-1516)
[»] scaffold0632 (1 HSPs)
scaffold0632 (5-93)||(3321-3408)
[»] scaffold0112 (1 HSPs)
scaffold0112 (10-94)||(37147-37230)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 8410794 - 8410935
Alignment:
Q  97 tttgtattattatcatcattaaaatcaaccacgtgtcaaaattatatcaaaccactttggtgggatttaaaacctctttggaaacctcgacaatagagga 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  8410794 tttgtattattatcatcattaaaatcaatcacgtgtcaaaattatatgaaaccactttagtgggatttaaaacctctttggaaacctcgacattagagga 8410893  T
Q  197 acccaaaccacaccaagatggtggttcttgaatatagtccaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8410894 acccaaaccacaccaagatggtggttcttgaatatagtccaa 8410935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 10007776 - 10007864
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  10007776 tcttaggggaccaaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10007864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 29968350 - 29968434
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||||||| ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  29968350 tcttaggggaccagaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaaggg-ggaaaagtgcacttta 29968434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 11287868 - 11287779
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||| |||| ||||||||||||||||| |||||||  |||||||||||||||||||| ||| ||| ||| | |||| |||||||||    
T  11287868 taattcttagggggccaaaattgtagtttctgtacttagtgggccaaaattgcaagttttttaaagttaggggtgaaaaagtgcacttta 11287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 30335715 - 30335639
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||| ||| | |||||||   ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  30335715 aaaattgtaatttttgtacttagcgagccaaaattgcaagtttttaaaagttaagggtggaaaaatgcactttagcc 30335639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 10006432 - 10006343
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||| |||||||||| ||||  ||||||||| |||||||||||||||||||| ||| |||  || |||||| |||||||||||||    
T  10006432 tcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcca 10006343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 12351998 - 12351921
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| || ||||||||||| ||||| ||| ||||||| || ||||||||||||||||    
T  12351998 caaaattgtagtttttgtacttagggggtcaaaattgcaaatttttgaaagttaagggggggaaaatgcactttagcc 12351921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 18979143 - 18979220
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||| || ||| ||| ||| |||||| |||||||||||    
T  18979143 ccaaaattgtagtttttatatttagggggccaaaattgcaagttgttgaaagttagggggggaaaagtgcactttagc 18979220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 22221388 - 22221465
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  22221388 caaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 22227730 - 22227807
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  22227730 caaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 22227807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 1823640 - 1823552
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||| |||||||||||| | |||||||  || ||||||||||||||||||||| ||||||| | |||| | ||||||||||    
T  1823640 tcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcc 1823552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 1858085 - 1857997
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||| |||||||||||| | |||||||  || ||||||||||||||||||||| ||||||| | |||| | ||||||||||    
T  1858085 tcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcc 1857997  T

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Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 12353374 - 12353460
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| |||||||| |||||| | |||||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  12353374 tcttagggggccaaaattatagttt-tgtacttagggggccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcc 12353460  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 1824091 - 1824174
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactt 88  Q
    |||| |||| ||||||||||||||| | |||||||| | |||||||||||||||||| ||| |||  || ||||||||||||||    
T  1824091 tcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagttagagggggaaaaatgcactt 1824174  T

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Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 1858536 - 1858619
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactt 88  Q
    |||| |||| ||||||||||||||| | |||||||| | |||||||||||||||||| ||| |||  || ||||||||||||||    
T  1858536 tcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaagttagagggggaaaaatgcactt 1858619  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 36249608 - 36249550
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccat 95  Q
    ||||||||||||||||||| ||||| ||| ||||||| |||||| ||||||||||||||    
T  36249608 taggaggccaaaattgcaactttttgaaacttaaggggggaaaagtgcactttagccat 36249550  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 22220476 - 22220387
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||| ||||||||||||||| ||||| |||| || ||||||||||||| ||| ||| |||  || |||||| |||||||||||||    
T  22220476 tcttagggggccaaaattgtagtttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcactttagcca 22220387  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 24122970 - 24122883
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||| |||||| |||||| | |||||||| || ||||||||||| ||||| ||| || |||| |||||||||||||||||||    
T  24122970 tcttaggggactaaaattatagtttttgtacttagggggtcaaaattgcaaattttttaaagtt-aggggggaaaaatgcactttagcc 24122883  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 11283227 - 11283310
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||||  ||| ||||| |||| ||| |||||| ||| ||||| ||| ||||||| || ||||||||||||||||    
T  11283227 ggggaccaaaattgtcatttttatacatagggggctaaaattacaactttttgaaagttaagggggggaaaatgcactttagcc 11283310  T

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Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 24483200 - 24483142
Alignment:
Q  36 ttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||| |||||||||||||||||||| ||||||| | | |||||| |||||||||||||    
T  24483200 ttagggggccaaaattgcaagtttttgaaaattaggaggggaaaagtgcactttagcca 24483142  T

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Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 5514058 - 5513982
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| ||||||||||| |||||||| ||| || |||| | |||| ||||||||||||    
T  5514058 caaaattgtagtttttgtacttagggggccaaaattggaagtttttgaaagtt-agggggtaaaagtgcactttagcc 5513982  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 5514294 - 5514370
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | || |||| |||| |||||||||||||||| ||||||| ||||  |||| ||||||||||||    
T  5514294 caaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattagggga-taaaagtgcactttagcc 5514370  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 8389702 - 8389787
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||||| ||||||||||||| | ||| || | | |||||||||||| ||||| ||| ||||| | |||||| |||||||||    
T  8389702 tcttaggggactaaaattgtagtttttgtacataagggaccaaaattgcaactttttgaaacttaagaggggaaaagtgcacttta 8389787  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 11282064 - 11282011
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||||||||||||| ||||||||| ||||||| | |||| |||||||||    
T  11282064 tagggggccaaaattgcaactttttaaaagttaagggggaaaaagtgcacttta 11282011  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 3819539 - 3819488
Alignment:
Q  42 ggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||||||||  |||| ||| ||||||| ||||||||||||||||||||    
T  3819539 ggccaaaattgcaacattttgaaacttaaggg-ggaaaaatgcactttagcca 3819488  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 11456694 - 11456638
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||||||||||| ||||| ||||||| |||  ||||| ||||||||||||    
T  11456694 tagggggccaaaattgcaaatttttgaaaattagggggagaaaagtgcactttagcc 11456638  T

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Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30336526 - 30336602
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||||||| ||||||  |||||||| ||| ||| ||| | | || ||||||||||||    
T  30336526 aaaattgtagtttttgtacttaggaggctaaaattataagtttttgaaagttaggggggaagaagtgcactttagcc 30336602  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 45112961 - 45112875
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttt 89  Q
    |||||||| ||||||||||||| || ||| | ||||||| || | |||||| ||| ||||| ||| ||| |||||||||||||||||||    
T  45112961 taattcttaggggaccaaaattataatttttgtacttag-agactaaaattacaaatttttgaaagtta-gggaggaaaaatgcacttt 45112875  T

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Target: scaffold0320 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 19576 - 19488
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||| |||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  19576 tcttaggggatcaaaattgtagtttttatacttagggggccaaaattgcaaggttttgaaaattaaggggggaaaaatgcactttagcc 19488  T

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Target: scaffold0302 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17562 - 17470
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  17562 taattcttggggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcactttagcc 17470  T

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Target: scaffold0302; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 18799 - 18879
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccat 95  Q
    |||||||| |||||| | ||| |||| | |||||||||||| ||||||||| ||| | | | |||| ||||||||||||||    
T  18799 ccaaaattatagtttttgtacctaggggaccaaaattgcaaatttttaaaagttaggagggaaaaagtgcactttagccat 18879  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1796146 - 1796053
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| |||||||||||||| | |||||||| ||||||| |||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  1796146 taattcttgggggatcaaaattgtagtttttgtacttaggtggccaaagttgcaagtttttgaaagttaggggtggaaaaatgcactttagcca 1796053  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 33160310 - 33160387
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||||    
T  33160310 caaaattgtagtttctatacttagggggctaaaattgcaagtttttgaaaattaaggggggaaaagtgcactttagcc 33160387  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 16650880 - 16650956
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  16650880 aaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcactttagcc 16650956  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 18486915 - 18487003
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| |||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||| || ||| ||||||||||||    
T  18486915 tcttagggggccaaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaagggggggaaagtgcactttagcc 18487003  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 40255685 - 40255773
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| | |||||| ||||||||||||    
T  40255685 tcttagggggccaaaattgtagtttctgtatttagggggtcaaaattgcaagtttttaaaaattaagaggggaaaagtgcactttagcc 40255773  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 22940646 - 22940724
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||| ||| | |||||||| |||||||||||||||||||| ||| ||||||| |||||| |||||||||||||    
T  22940646 caaaattgtaatttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcca 22940724  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20216772 - 20216861
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||| ||||||||||||||| | ||  ||||  || |||||||||||||||| ||||||||||| |||||| |||||||||    
T  20216772 taattcttggggggccaaaattgtagtttttgtatatagggagctaaaattgcaagtttttgaaaattaaggggggaaaagtgcacttta 20216861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 25523146 - 25523069
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| ||| |||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  25523146 caaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 25523069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 28539833 - 28539917
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||||||||||||||||||| | |||||||  || ||||||||||||||||||||| || |||| ||||||||||||||||    
T  28539833 tcttaggggaccaaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagtt-aggggggaaaaatgcacttta 28539917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 36486501 - 36486589
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||||||||||||||||| | |||||||| || ||||||||||||||||||||| ||| ||| | |||| ||||||| ||||    
T  36486501 tcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcc 36486589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 19752994 - 19752912
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| | |||||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||||||    
T  19752994 gggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcactttagcc 19752912  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 25056405 - 25056486
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccatat 97  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||| ||| ||| | | |||||| ||||||||||||||||    
T  25056405 caaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcactttagccatat 25056486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 25524150 - 25524229
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatta-agggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||| | |||||||| |||||||||| ||| |||||||||||||  ||| |||||| ||||||||||||    
T  25524150 ccaaaattgtagtttttgtacttagggggccaaaattacaaatttttaaaaattaggggggggaaaagtgcactttagcc 25524229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 36485388 - 36485302
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttag 91  Q
    |||| |||| |||||||| |||||| | |||||| |||| |||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  36485388 tcttagggggccaaaattatagtttttgtacttaagaggtcaaaattgtaagttttttaaagttaggggtggaaaaatgcactttag 36485302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 20214287 - 20214195
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||| ||| ||||||||||||||| | ||| |||   || |||||||||||||||| ||| ||||||| |||||| |||||||||||||    
T  20214287 taattcttgaggggccaaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcca 20214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 19754148 - 19754232
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggag-gaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| | || ||||| |||||||||||||||||||| ||| ||| ||| |  |||||||||||||||||    
T  19754148 gggggccaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttaggggggaaaaaaatgcactttagcc 19754232  T

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Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 28538752 - 28538676
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||| | || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  28538752 aaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcactttagcc 28538676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 18485216 - 18485138
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||| ||||  ||||||||| |||||||||||||||||||| ||| |||  || | |||| ||||||||||||    
T  18485216 ccaaaattgttgttttgatacttagggggccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcc 18485138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 24332990 - 24332916
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||||| | ||| || | |||||||||||||||||||| ||| ||||||| | |||| |||||||||    
T  24332990 caaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 24332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 5730502 - 5730441
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaa-gggaggaaaaatgcactttagcc 93  Q
    ||||||||| ||||||||||||||||||| ||| |||| ||| |||||| ||||||||||||    
T  5730502 tacttaggaagccaaaattgcaagtttttgaaagttaagggggggaaaagtgcactttagcc 5730441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 20424952 - 20424871
Alignment:
Q  159 ggatttaaaacctctttggaaacctcgacaatagaggaacccaaaccacaccaagatggtggttcttgaatatagtccaagt 240  Q
    ||||||||||||||||| ||||||  |||| | || ||||| |||||| |||||||||| || |||||| ||||||| ||||    
T  20424952 ggatttaaaacctctttagaaaccatgacattggaagaacctaaaccataccaagatgggggatcttgattatagtctaagt 20424871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 33158175 - 33158098
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | ||||||||  | ||||||||||||||||| ||| ||| |||   |||||||||||||||||    
T  33158175 caaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaaaaatgcactttagcc 33158098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 2686419 - 2686474
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaa 65  Q
    ||||||||||||| |||||| | |||||| |||  |||||||||||||||||||||    
T  2686419 ggggaccaaaattatagtttttgtacttaagagatcaaaattgcaagtttttaaaa 2686474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 41663768 - 41663827
Alignment:
Q  35 cttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||| ||||||||| |||| ||||||||| |||| ||  |||||||||||||||||||    
T  41663768 cttagggggccaaaatcgcaactttttaaaacttaaagggtgaaaaatgcactttagcca 41663827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 12402285 - 12402366
Alignment:
Q  159 ggatttaaaacctctttggaaacctcgacaatagaggaacccaaaccacaccaagatggtggttcttgaatatagtccaagt 240  Q
    ||||||||||| ||||| ||||||  |||| | || |||| ||||||| ||||||| || || ||||||||||| |||||||    
T  12402285 ggatttaaaacatctttagaaaccatgacattggaagaactcaaaccataccaagacgggggatcttgaatataatccaagt 12402366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 42195220 - 42195137
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| ||||||||||||||||| || | ||| |||| ||||||||| |||| ||||| ||| ||||||| |||||| |||||||||    
T  42195220 tcttaggggaccaaaattgtagattttgtacatagggggccaaaatcgcaacttttt-aaagttaaggg-ggaaaagtgcacttta 42195137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 5778877 - 5778937
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| ||| |||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  5778877 tacttagggggcaaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 5778937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7311666 - 7311622
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagttttt 61  Q
    ||||||||||||| | ||||| ||||||||| |||||||||||||    
T  7311666 aaaattgtagtttttgtacttgggaggccaatattgcaagttttt 7311622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36449870 - 36449778
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||  |||||||||||||| | |||||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  36449870 taattcttgggggggcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 36449778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7898779 - 7898694
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||  ||||| |||||||||    
T  7898779 tcttagggggccaaaattgtagtttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcacttta 7898694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 36450930 - 36451018
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||| || |||||||||||||| |||||||| | |||||||||||||||||| ||| ||||||| |||||| |||||||||    
T  36450930 taattcttggggggccgaaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcacttta 36451018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 7899907 - 7899983
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||| |||||||| | |||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  7899907 aaaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 7899983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 18299456 - 18299372
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| ||||||||||||||| |||||||||| ||||||||||| |||||||| ||| ||| ||| |||||| |||||||||||||    
T  18299456 gggggccaaaattgtagtttttatacttaggtggccaaaattgaaagtttttgaaagttacgggtggaaaagtgcactttagcca 18299372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 18904459 - 18904367
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| ||| |||||||||||||||| | |||||| | ||||||||||||| |||||| ||| ||||||| |||||| ||||||||||||    
T  18904459 taattcttagggaaccaaaattgtagtttttgtacttaaggggccaaaattgcacgtttttgaaagttaaggggggaaaagtgcactttagcc 18904367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 38839330 - 38839242
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | || ||||| ||| |||||||||||||||| ||||||||||| | |||||||||||||||||    
T  38839330 tcttagggggccaaaattgtagtttttgtagttagggggctaaaattgcaagtttttgaaaattaagggggaaaaaatgcactttagcc 38839242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13570566 - 13570658
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||||||||||| |||||| | |||||| | | | |||||||||||||||| ||| ||| |||  ||||||||||||||||||    
T  13570566 taattcttgggggaccaaaattatagtttttgtacttaagggactaaaattgcaagtttttgaaagttatgggtagaaaaatgcactttagcc 13570658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16446246 - 16446154
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||| | |||||||||||||| | || ||| ||||  |||||||||||||||| ||| |||||||  ||||||||||||||||||    
T  16446246 taattcttggggtatcaaaattgtagtttttgtatttatgaggttaaaattgcaagtttttgaaagttaagggtagaaaaatgcactttagcc 16446154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 38840518 - 38840594
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||| ||| |||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  38840518 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 38840594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 41879237 - 41879313
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||| | |||| || |||||||||    
T  41879237 aaaattgtagtttatgtacttagggggccaaaattgcaagtttttgaaaattaagggggaaaaagtgtactttagcc 41879313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 18869006 - 18868924
Alignment:
Q  11 gggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||||||||||| | || |||||||||||||||||||||||||| ||| ||| ||| |||||| | ||||||||||    
T  18869006 gggatcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagcc 18868924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 11258824 - 11258912
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||| ||||||||||||| | |||||||| |||||||||||||||||||| ||| |||  |  || ||||||||||||||||    
T  11258824 tcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagagaggggaaaatgcactttagcc 11258912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 23869560 - 23869635
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | || ||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  23869560 aaaattgtagtttttgtatttagggggccaaaattgcaagttttt-aaagttaagggtggaaaagtgcactttagcc 23869635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 22587977 - 22588054
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||| | ||| |||| |||||||||||||||||||| ||| ||| | | |||||||||||||||||||    
T  22587977 ccaaaattgtagtttttgtacatagg-ggccaaaattgcaagtttttgaaagttatgaggggaaaaatgcactttagcc 22588054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 8534673 - 8534586
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||| |||||||||||||||||||||||||   |  |||||||| |||||||| ||||||||||| ||||||  ||||||||    
T  8534673 taattcttgggg-accaaaattgtagtttctatacttaaaggatcaaaattgtaagtttttgaaaattaaggg-ggaaaagagcacttta 8534586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 11938829 - 11938889
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||| |||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  11938829 tacttaggagaccaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 11938889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 41878172 - 41878091
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgca---agtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||||||||||| |||||||| |||||||||||||   ||||||| ||| ||||||| || ||| |||||||||||||    
T  41878172 ccaaaattgtagtttctgtacttagggggccaaaattgcaaatagtttttgaaagttaaggg-gggaaagtgcactttagcca 41878091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 32739706 - 32739623
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| | ||| || | |||||||||||||||||||| ||| ||| ||||  |||||| ||||||||||    
T  32739706 gggggccaaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttaggggaaaaaaaatacactttagcc 32739623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 22848269 - 22848191
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||| | || ||||| | |||||||||||||||||| ||| ||| ||| | |||| ||||||||||||    
T  22848269 ccaaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcc 22848191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 24475307 - 24475241
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggagg 76  Q
    |||| ||||||||||||||| |||||||||| ||| |||||| ||||||||| ||| ||| ||||||    
T  24475307 gggggccaaaattgtagtttttatacttagggggcaaaaattacaagtttttgaaagttaggggagg 24475241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 1034514 - 1034570
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||| |||||| ||| ||||||| |||||| ||||||||||||    
T  1034514 tagggggccaaaattgcatgtttttgaaagttaaggggggaaaagtgcactttagcc 1034570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 18906012 - 18906088
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||| ||| |||||||||||||||| ||| |||   | |||||| ||||||||||||    
T  18906012 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcactttagcc 18906088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 11257699 - 11257622
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||| |||||||||| |   |||||||||||||||| ||| |||  |||| |||| ||||||||||||    
T  11257699 ccaaaattgtagtttttatacttagg-gtttaaaattgcaagtttttgaaagttagaggagtaaaagtgcactttagcc 11257622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 13568054 - 13568004
Alignment:
Q  11 gggaccaaaattgtagtttctatacttaggaggccaaaattgcaagttttt 61  Q
    |||| |||||||||||||| | || ||||| ||||||||||||||||||||    
T  13568054 gggatcaaaattgtagtttttgtatttagggggccaaaattgcaagttttt 13568004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 18797324 - 18797246
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatta-agggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||  ||||||| | || ||||||||||||||||| ||| |||  ||| |||||| ||||||||||||    
T  18797324 caaaattgtagttttaatacttaaggggtcaaaattgcaagtttttgaaagttagggggtggaaaagtgcactttagcc 18797246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 802615 - 802691
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||  ||| |||||||||||||||||||| ||| || |||| |||||| | ||||||||||    
T  802615 caaaattgtagtttttgtacacagggggccaaaattgcaagtttttgaaactt-aggggggaaaagtacactttagcc 802691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 24476868 - 24476917
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaa 65  Q
    |||||||||||||| | |||||||| | |||||||| |||||||||||||    
T  24476868 caaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaa 24476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 26829333 - 26829389
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||| ||||  |||||||| |||||||| ||||| ||||||||||||    
T  26829333 tagggggccaaaatcgcaacattttaaaacttaagggatgaaaagtgcactttagcc 26829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 36613928 - 36614006
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| | |||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  36613928 caaaattgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggaggaaaaatgcactttagcca 36614006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 51684454 - 51684364
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccat 95  Q
    |||| |||| ||||||||||||||| ||||| |||| |||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  51684454 tcttagggggccaaaattgtagtttttatacatagggggccaaaattgcaactttttaaaagttaaggggggaaaagtgcactttagccat 51684364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 11436130 - 11436042
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||| ||| |||| || |||||| ||||||||||||    
T  11436130 tcttagggggccaaaattgtagtttttatacttaaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcactttagcc 11436042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 52275056 - 52274952
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccatatttgtatt 104  Q
    |||| |||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||| ||| ||| | |||| |||||||||||| |||| |||||    
T  52275056 tcttaggggcccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagccttattagtatt 52274957  T
Q  105 attat 109  Q
    |||||    
T  52274956 attat 52274952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 39698641 - 39698563
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||||||||| ||||||| || ||| ||||||||||||    
T  39698641 ccaaaattatagtttctgtacttagggggccaaaattgaaagtttttaaaagttaaggggggtaaagtgcactttagcc 39698563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 50680419 - 50680335
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||||| |||||| |||||| |||||||||| ||||||||||||||||||||  || ||||||| ||||||||||||||||    
T  50680419 tcttaggggactaaaattatagtttttatacttagggggccaaaattgcaagtttttggaagttaaggg-ggaaaaatgcacttta 50680335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 24422888 - 24422800
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | |||||||| || ||||||||||||||||| ||| ||||||| | |||| ||||||||||||    
T  24422888 tcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcactttagcc 24422800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 50681623 - 50681706
Alignment:
Q  11 gggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||| |||||||||| |||| ||||   ||||||||||||||||||| ||||||||| | |||||| |||||||||||||    
T  50681623 gggaccaatattgtagtttttatagttagagagccaaaattgcaagtttttgaaaattaagaggggaaaagtgcactttagcca 50681706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 39699780 - 39699868
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||| ||||||||||||||||| |||||||| || |||||||||||||| || ||| || |||| |||||| |||||||||||||    
T  39699780 tcttagggggccaaaattgtagtttctgtacttagggggtcaaaattgcaagttattgaaagtt-aggggggaaaagtgcactttagcca 39699868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 11437212 - 11437300
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | |||||| | | |||||||||||||||||| ||| ||||||| | |||| ||||||||||||    
T  11437212 tcttagggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcc 11437300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 37526900 - 37526975
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||| ||||||||| |||||  ||||||||||||||||||| ||| ||||||| |||||| | |||||||    
T  37526900 ccaaaattgtggtttctatatttagggagccaaaattgcaagtttttgaaagttaaggggggaaaagtacacttta 37526975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 39222501 - 39222576
Alignment:
Q  20 attgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatt-aagggaggaaaaatgcactttagcca 94  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||| || ||||| | |||| |||||||||||||    
T  39222501 attgtagtttttatacttagggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcactttagcca 39222576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 24426088 - 24426182
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccatattt 99  Q
    |||| |||||| ||||||||||||| | |||||||| |||||||||||||||||||| ||| |||  || || ||| ||||||||| || |||||    
T  24426088 tcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagaggggggaaagtgcactttaaccttattt 24426182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 39152008 - 39151934
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||||| | ||| |||| |||||||||| ||||||||| ||| ||||||| | ||||||||||||||    
T  39152008 caaaattgtagtttttgtacatagggggccaaaattacaagtttttgaaacttaagggggaaaaaatgcacttta 39151934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 45148657 - 45148580
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||| ||||| | | |||| |||||||||||||    
T  45148657 caaaattgtagttttt-tacttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcactttagcca 45148580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 20425083 - 20425002
Alignment:
Q  159 ggatttaaaacctctttggaaacctcgacaatagaggaacccaaaccacaccaagatggtggttcttgaatatagtccaagt 240  Q
    ||||||||||||||||| ||||| |||||| | || ||  | |||||||||||| || |||| |||||||||||||||||||    
T  20425083 ggatttaaaacctctttagaaacatcgacattggaagattctaaaccacaccaatatagtggatcttgaatatagtccaagt 20425002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 35594293 - 35594217
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  35594293 caaaattgtagttttaatacttagg-ggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 35594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 21185264 - 21185208
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||  |||| ||||||||| |||||||| ||||||||||||||||||    
T  21185264 taggaggccaaaagcgcaactttttaaaacttaagggatgaaaaatgcactttagcc 21185208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 23980487 - 23980567
Alignment:
Q  13 gaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||| |||||| | ||||||||  ||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  23980487 gaccaaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcactttagcc 23980567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 36612928 - 36612853
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||| ||  |||||||||||| ||||| ||| ||||||| |||||||||||||||||||    
T  36612928 aaaattgtagtttttgtacttaagat-ccaaaattgcaaatttttgaaagttaaggggggaaaaatgcactttagcc 36612853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 35067020 - 35067103
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| | | | |||| ||||||||| |||| ||||| ||| ||||||| |||||| ||||||||||||    
T  35067020 gggggccaaaattgtagtttttgttcatagggggccaaaatcgcaactttttgaaacttaaggggggaaaagtgcactttagcc 35067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 39153140 - 39153214
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||||| | ||| || | |||||||||||||||||||| ||| ||||||| | |||| |||||||||    
T  39153140 caaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcacttta 39153214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 7674603 - 7674528
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| | |||||||||||||||||||||| || |||| ||||||  |||||||||||    
T  7674603 caaaattgtagtttttgtacttagg-gcccaaaattgcaagtttttaaaagtt-aggggggaaaagggcactttagcc 7674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 14999361 - 14999285
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| || ||||||||||||||||| ||| || |||| |||||| | ||||||||||    
T  14999361 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagtt-aggggggaaaagtacactttagcc 14999285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 45156125 - 45156052
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||| | ||| ||| ||| |||||||| |||||||| ||| |||||||||||||| || ||||||    
T  45156125 aaaattgtagtttttgtacatagaaggtcaaaattgtaagtttttgaaacttaagggaggaaaagtgaacttta 45156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 45157233 - 45157309
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | ||| |||| |||||||||||||||||||| ||| || |||| || ||| ||||||||||||    
T  45157233 caaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaactt-agggggggaaagtgcactttagcc 45157309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 52827407 - 52827347
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  52827407 tacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 52827347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 41364885 - 41364828
Alignment:
Q  36 ttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||| |||||||||||||||||||| ||| ||| |||| ||||| |||||||||||||    
T  41364885 ttagggggccaaaattgcaagtttttgaaagttagggga-gaaaagtgcactttagcca 41364828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 45149995 - 45150068
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||| |||| | |||||| | |||||||||||||||||||| ||| || |||| |||||| |||||||||    
T  45149995 caaaattgttgtttttgtacttaaggggccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcacttta 45150068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 11190434 - 11190385
Alignment:
Q  44 ccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||| ||||||||| |||||||  ||||| ||||||||||||    
T  11190434 ccaaaattgcaactttttaaaatttaaggggtgaaaagtgcactttagcc 11190385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 52828111 - 52828168
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||  ||||||||||||||||||| |||||||  || |||||| |||||||||    
T  52828111 tacttagggagccaaaattgcaagtttttgaaaattagagggggaaaagtgcacttta 52828168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 21945763 - 21945708
Alignment:
Q  37 taggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||||||| ||||||||| |||| || |||||| | ||||||||||    
T  21945763 taggaggccaaaattgcaactttttaaaacttaaagg-ggaaaagtacactttagcc 21945708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 40384808 - 40384748
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaa 70  Q
    ||||| |||||||||||||| | ||| |||||| | |||||||||| ||||| ||||||||    
T  40384808 ggggatcaaaattgtagtttttgtacataggagactaaaattgcaactttttgaaaattaa 40384748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 43058861 - 43058817
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagttttt 61  Q
    ||||||||||||| | |||||||| || |||||||||||||||||    
T  43058861 aaaattgtagtttttgtacttagggggtcaaaattgcaagttttt 43058817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 49109 - 49186
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||    
T  49109 aaaattgtagttttaatacttaggaggccaaaattgcaagtttttaaaagttaagggtggaaaagtgcaatttagcca 49186  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 22629574 - 22629483
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaaggga---ggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  22629574 tcttagggggccaaaattgtagtttttgtacttaggaggccaaaattacaagtttttgaaaattaagggagggggaaaaatgcactttagcc 22629483  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48934912 - 48935005
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| ||||||| |||||| | |||||||  || ||||||| ||||||||| ||| ||| ||| ||||||||||||||||||||    
T  48934912 taattcttgggggatcaaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcactttagcca 48935005  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11658471 - 11658379
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||| ||||||||||||||||||| | ||| |||| ||| ||||||||| |||||| ||| ||||||| |||||| |||| |||||||    
T  11658471 taattcttgagggaccaaaattgtagtttttgtacatagggggctaaaattgcatgtttttgaaagttaaggggggaaaagtgcaatttagcc 11658379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11662560 - 11662649
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||| |||||||| |||||| | ||| |||   || |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  11662560 taattcttggggggccaaaattatagtttttgtacatagagagctaaaattgcaagtttttgaaagttaaggggggaaaaatgcacttta 11662649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 18371512 - 18371423
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||| ||||||||||||||| | |||||| | |||||||||||||||||||| ||| ||| | | |||||| |||||||||||||    
T  18371512 tcttagggggccaaaattgtagtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcactttagcca 18371423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 7500542 - 7500455
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| |||||||||| ||||||||||||||  |  ||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  7500542 tcttagggggccaaaattgtggtttctatacttagaggatcaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcactttagcc 7500455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 18372470 - 18372534
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatta 69  Q
    |||| |||| ||||||||||||||| | |||||||| |||||||||||||||||||| |||||||    
T  18372470 tcttagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaaatta 18372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 7501875 - 7501953
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||| ||||  ||||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  7501875 ccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 7501953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 3227635 - 3227695
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  3227635 tacttagggggccaaaattgcaagtttttgaaagttagggggggaaaagtgcactttagcc 3227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 22630477 - 22630553
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | || ||||| |||||||||||||||||||| ||| ||| ||  |||||| ||||||||||||    
T  22630477 aaaattgtagtttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcactttagcc 22630553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 31949382 - 31949322
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||||||| ||  |||||| ||||||||||||    
T  31949382 tacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagcc 31949322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 769491 - 769413
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||| | ||||||||| | ||||||||||||||||| |||||||  || |||||| ||||||||||||    
T  769491 ccaaaattataatttttgtacttaggatgtcaaaattgcaagtttttgaaaattacaggtggaaaattgcactttagcc 769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 31659711 - 31659621
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggagg-aaaaatgcactttagcca 94  Q
    |||| |||| ||||||||||||||| | |||||||| || |||||||| |||||||| ||| ||| ||| || |||| |||||||||||||    
T  31659711 tcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggggggtaaaagtgcactttagcca 31659621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 17782594 - 17782654
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  17782594 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 17782654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 43899524 - 43899443
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccatatt 98  Q
    ||||||||||| ||| |||| |||| ||  ||||||||||||||||| ||| ||||||||  ||||||| ||||||||| ||||    
T  43899524 ccaaaattgtaatttttatatttagaagatcaaaattgcaagtttttgaaagttaaggga--aaaaatgtactttagccctatt 43899443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 47525393 - 47525469
Alignment:
Q  18 aaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||| ||||  ||||||||| ||| |||||||||||||||| ||| |||  || |||||| |||||||||||||    
T  47525393 aaattgtggttttgatacttagggggctaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcca 47525469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 3227167 - 3227109
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    |||||||| |||||||||||||||||||| |||||| |||| || ||| |||||||||||    
T  3227167 tacttagggggccaaaattgcaagtttttgaaaatt-agggggggaaagtgcactttagc 3227109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 17781721 - 17781663
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttag 91  Q
    |||||||| || ||||||||||||||||| ||| ||| ||| |||||| ||||||||||    
T  17781721 tacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcactttag 17781663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 47369859 - 47369781
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||| | |||||| ||||| |||||||||||||||| ||| ||| ||||  |||| |||| |||||||    
T  47369859 ccaaaattatagtttttgtacttatgaggctaaaattgcaagtttttgaaagttaggggaaaaaaagtgcattttagcc 47369781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 31949846 - 31949903
Alignment:
Q  36 ttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||| |||||||||||||||||||| ||| ||| ||| |||| | ||||||||||||    
T  31949846 ttagggggccaaaattgcaagtttttgaaagttagggggggaagagtgcactttagcc 31949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 34351568 - 34351524
Alignment:
Q  17 aaaattgtagtttctatacttaggag-gccaaaattgcaagttttt 61  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  34351568 aaaattgtagtttctatactt-ggagagccaaaattgcaagttttt 34351524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 127396 - 127337
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| | |||||||||||||||||| ||| || |||| |||||| ||||||||||||    
T  127396 tacttaggggaccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcactttagcc 127337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 20163585 - 20163657
Alignment:
Q  21 ttgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||| | ||| ||||  ||||||||||||||||||| ||| ||| ||| ||| || ||||||||||||    
T  20163585 ttgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggggtggagaagtgcactttagcc 20163657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 14822448 - 14822360
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||  ||||| |||||| |||||    
T  14822448 tcttagggggccaaaattgtagtttctatacttatggggccaaaattgcaagtttttgaaaattaaggggtgaaaagtgcactctagcc 14822360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 10784681 - 10784592
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaaggga-ggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| |||||||||| ||  |||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  10784681 tctttgggggccaaaattgtagtttttatacttagggggttaaaattgcaagtttttaaaagttaagggagggaaaagtgcactttagcc 10784592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 16704521 - 16704598
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| || ||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  16704521 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggaggaaaagtgcactttagcc 16704598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 7316317 - 7316395
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||| ||||| ||| ||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  7316317 ccaaaattgtggtttcaatatttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 7316395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 14823588 - 14823677
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaa-tgcactttagcc 93  Q
    |||| |||| ||||||||||||||||| |||||| | ||| |||||||||||||||| ||||||||||| | ||||| ||||||||||||    
T  14823588 tcttagggggccaaaattgtagtttctgtacttaaggggctaaaattgcaagttttttaaaattaagggggaaaaaagtgcactttagcc 14823677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 1829616 - 1829701
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||| ||||||||||||||| |||||||||| || ||||||||||||||||||||| ||| |||   |||| |||||||||    
T  1829616 tcttagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaagttagggggaaaaaagtgcacttta 1829701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 12382724 - 12382811
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    |||| ||||| ||||||| ||||||  ||||||||| || ||||||| ||| |||||||||||||  || |||||| |||||||||||    
T  12382724 tctttggggatcaaaattatagttttaatacttagggggtcaaaattacaaatttttaaaaattagaggtggaaaagtgcactttagc 12382811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 1828789 - 1828739
Alignment:
Q  43 gccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| |||||||||||||| || | |||||||||||||||||    
T  1828789 gccaaaattgcaaatttttaaaaattaaaggggaaaaaatgcactttagcc 1828739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 7314956 - 7314879
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||| ||||  ||||||||| |||||||||||||||||||| ||| |||  || |||||| |||||||||||||    
T  7314956 caaaattgttgttttgatacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcca 7314879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 27437905 - 27437828
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| |||   |||| |||||||||||||| ||||| ||| |||||||  ||||| ||||||||||||    
T  27437905 caaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcc 27437828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 8659325 - 8659265
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  8659325 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8659265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 8821933 - 8821873
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  8821933 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 8821873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 27447963 - 27448014
Alignment:
Q  42 ggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||| || ||||||||| ||||||| |||||| ||||||||||||    
T  27447963 ggccaaaattgtaactttttaaaacttaaggggggaaaagtgcactttagcc 27448014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 8822834 - 8822895
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||| || ||||||||||||||||| ||| |||| |  |||||| |||||||||||||    
T  8822834 tacttagggggtcaaaattgcaagtttttgaaagttaaagagggaaaagtgcactttagcca 8822895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 3721672 - 3721612
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  3721672 tacttagggggtcaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 3721612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 6842308 - 6842384
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| |  || |||| |||||||||||||| ||||| ||| |||  || |||||| ||||||||||||    
T  6842308 aaaattgtagtttttgcacatagggggccaaaattgcaactttttgaaacttagagggggaaaagtgcactttagcc 6842384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 29473126 - 29473082
Alignment:
Q  44 ccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactt 88  Q
    |||||||||||| ||||||||| ||||||| |||||| |||||||    
T  29473126 ccaaaattgcaactttttaaaacttaaggggggaaaagtgcactt 29473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 34834605 - 34834677
Alignment:
Q  18 aaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||| ||||  |||||||||||  ||||||||||||||||| ||| ||| ||  |||||| |||||||||    
T  34834605 aaattgtggttttgatacttaggagatcaaaattgcaagtttttgaaagttagggagggaaaagtgcacttta 34834677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 21539095 - 21539159
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaa 80  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  21539095 caaaattgtagtttttacacttaggaggccaaaattgcaagtttttaaaaattaagggtggaaaa 21539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1963288 - 1963196
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||| | ||||||||||||| | ||| ||||||||||||||||||| ||||| ||| ||||||| |||||| ||||||||||||    
T  1963288 taattcttagggggctaaaattgtagtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcactttagcc 1963196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 8758860 - 8758935
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||| |||||| |||| ||||    
T  8758860 ccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcatttta 8758935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1964450 - 1964543
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||  ||||||||||||||||||| | | | |||| ||||||||||| || ||||||||| ||||||| |||||| |||||||||||||    
T  1964450 taattcttaagggaccaaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcactttagcca 1964543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17383084 - 17382993
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| ||||||||||||||| | |||||| | | |||||||||||||||||| ||| ||| |||| ||||| ||||||||||||    
T  17383084 taattcttggggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttagggga-gaaaagtgcactttagcc 17382993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 17388220 - 17388311
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| ||||||||||||||| | |||||| | | |||||||||||||||||| ||| || |||| |||||| ||||||||||||    
T  17388220 taattcttggggggccaaaattgtagtttatgtacttaagggaccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcactttagcc 17388311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 31599877 - 31599789
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||||||||||||||||| | |||||||| || ||||||||||||||||||||| ||| ||| | |||| ||||||| ||||    
T  31599877 tcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcacttcagcc 31599789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 19750600 - 19750673
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttag 91  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  19750600 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagtt-aggggggaaaagtgcactttag 19750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 19789206 - 19789133
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttag 91  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  19789206 aaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagtt-aggggggaaaagtgcactttag 19789133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 10471429 - 10471490
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10471429 tacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcca 10471490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 35935546 - 35935631
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||| ||||||||||||||| | |||||||| ||| |||||||||| ||||||||| ||||||| || ||| |||||||||    
T  35935546 tcttagggggccaaaattgtagtttatgtacttagggggctaaaattgcaaatttttaaaagttaagggggggaaagtgcacttta 35935631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 49308051 - 49308127
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||||||    
T  49308051 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcactttagcc 49308127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 1290223 - 1290299
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||  ||||||||||||||| |||| ||| ||||||| |||||| ||||||||||||    
T  1290223 aaaattgtagtttttgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcactttagcc 1290299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33296306 - 33296227
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||| |||||| |||||||||||| ||||||||  |||||||| |||||| |||||  ||||||||||||||    
T  33296306 ggggaccaaaattatagtttttatacttaggagaccaaaattataagtttttgaaaatt-agggaaaaaaaatgcacttta 33296227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 52491625 - 52491708
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||||| || ||||  | |||||||||||||||||| ||| ||||||| |||||| | ||||||||||    
T  52491625 gggggccaaaattgtagtttctgtatttagaggaccaaaattgcaagtttttgaaagttaagggtggaaaagtacactttagcc 52491708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8757752 - 8757675
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||||| |||||||| ||| ||||||| |||||||| ||| ||||||| | |||| ||||||||||||    
T  8757752 ccaaaattgtagtttctgtacttagggggctaaaattgtaagtttttgaaagttaaggg-gaaaaagtgcactttagcc 8757675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 12129700 - 12129626
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||||| | |||||| | |||||||||||||||||||| ||| ||||| | |||||| |||||||||    
T  12129700 caaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcacttta 12129626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 31601009 - 31601087
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| | |||||||| || ||||||||||||||||||||| |||  || | |||| |||||||||||||    
T  31601009 caaaattgtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcactttagcca 31601087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 1834203 - 1834118
Alignment:
Q  9 gggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||| ||||||||||||||| ||||| |||| || |||||||| |||||||| ||| |||  || |||||| |||||||||||||    
T  1834203 ggggggccaaaattgtagtttttatacatagggggtcaaaattgtaagttttttaaagttagagggggaaaagtgcactttagcca 1834118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 1835126 - 1835203
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||| ||| ||| ||  |||||| ||||||||||||    
T  1835126 caaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagtgcactttagcc 1835203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 26421646 - 26421722
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||| ||| || || | |||||| ||||||||||||    
T  26421646 caaaattgtagtttttgtacttaggaggtcaaaattgcaagtttttgaaagtt-agaggggaaaagtgcactttagcc 26421722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 13509372 - 13509459
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||| ||||||||||||||  |||||| || |||||||||||||| ||||||||| || |||| |||||| | ||||||||||    
T  13509372 tcttaggggatcaaaattgtagttttcatacttggggggccaaaattgcaattttttaaaagtt-aggggggaaaagtacactttagcc 13509459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 37728589 - 37728662
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggagg-aaaaatgcacttta 90  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||||| |||  ||||| ||||||||||||||    
T  37728589 caaaattgtagtttttgtacataggaggccaaaattgcaactttttaaaagtta--ggaggaaaaaatgcacttta 37728662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 48780308 - 48780248
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||||||||||||||||||||| ||| ||| |||||| ||||||||||||    
T  48780308 tacttagggggtcaaaattgcaagtttttaaaagttagggggggaaaagtgcactttagcc 48780248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25684982 - 25684929
Alignment:
Q  45 caaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccatatt 98  Q
    ||||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||    
T  25684982 caaaattgcaagtttttgaaagttagggggggaaaagtgcactttagccatatt 25684929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 10470594 - 10470546
Alignment:
Q  45 caaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  10470594 caaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 10470546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 25685863 - 25685923
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  25685863 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 25685923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 50909348 - 50909273
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| ||||  ||||||| ||||||||||| ||||||||| ||| ||||  |||||| ||||||||||    
T  50909348 aaaattgtagtttttatatataggaggtcaaaattgcaactttttaaaacttagggga-aaaaaatacactttagcc 50909273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 51291421 - 51291475
Alignment:
Q  42 ggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccata 96  Q
    |||||||||||||| ||||||||| |||||||  ||||| || ||||||||||||    
T  51291421 ggccaaaattgcaactttttaaaacttaaggggtgaaaattggactttagccata 51291475  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 3927747 - 3927666
Alignment:
Q  12 ggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||||||||  |||| | || ||||||||| ||||  |||||||| |||  || |||||| ||||||||||||    
T  3927747 ggaccaaaattgtagttttcatacatggggggccaaaatcgcaacattttaaaagttagagggggaaaagtgcactttagcc 3927666  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 5525419 - 5525360
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||||||||||||||||| ||| || |||| ||||||||| |||||||||    
T  5525419 tacttagggggtcaaaattgcaagtttttgaaagtt-aggggggaaaaatgtactttagcc 5525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 5526167 - 5526226
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||||||||||||||||||| ||| || || | |||||| ||||||||||||    
T  5526167 tacttagggggccaaaattgcaagtttttgaaagtt-agaggggaaaagtgcactttagcc 5526226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 20919584 - 20919632
Alignment:
Q  45 caaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||| |||| ||||||||| |||||||  ||||||||||||||||||    
T  20919584 caaaatcgcaactttttaaaacttaaggggtgaaaaatgcactttagcc 20919632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 55602458 - 55602379
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||| ||||||||||||| ||||  |||  | | |||||||||||||||| ||| |||| || ||||||||||||||||    
T  55602458 ggggactaaaattgtagtttttatatatagaggactaaaattgcaagtttttgaaagttaaagg-ggaaaaatgcacttta 55602379  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 7268850 - 7268924
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |||||| |||||||||    
T  7268850 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttgaaagtt-aggggggaaaagtgcacttta 7268924  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 46720022 - 46719939
Alignment:
Q  12 ggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccat 95  Q
    |||| ||||||||||||| ||||| |||| ||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||    
T  46720022 ggactaaaattgtagtttttatacatagggggccaaaatcgcaactttttaaaagttaaggggggaaaaatgcactttagccat 46719939  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7267731 - 7267647
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||| |||||| |||||||||    
T  7267731 tcttagggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggg-ggaaaagtgcacttta 7267647  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 53614910 - 53614819
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| ||||||||||||||| ||||  |||  | | ||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  53614910 taattcttggggg-ccaaaattgtagtttttatatatagaggactaaaattgtaagtttttgaaagttaagggaggaaaaatgcactttagcc 53614819  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 54540803 - 54540891
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | |||||| | || ||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  54540803 tcttagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 54540891  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 55192004 - 55192095
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||| ||| ||||||||||||||| | |||||||  |||||||||||||||||||| ||| ||||||| || ||||| ||||||||||    
T  55192004 taattcttgaggggccaaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaagttaaggg-gggaaaatacactttagcc 55192095  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 51038800 - 51038891
Alignment:
Q  2 aattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||  ||||||||||||||||||| | | | |||| || ||||||||||| ||||||||| ||||||| |||||| ||||||||||||    
T  51038800 aattcttaagggaccaaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcactttagcc 51038891  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 19984926 - 19984849
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | ||| |||| |||||||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  19984926 caaaattgtagtttttgtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagtgcactttagcc 19984849  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 7758478 - 7758402
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||||| | |||||||| || ||||||||||||||||| ||| ||||||| | |||| ||||||||||||    
T  7758478 aaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcactttagcc 7758402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 19543733 - 19543781
Alignment:
Q  157 tgggatttaaaacctctttggaaacctcgacaatagaggaacccaaacc 205  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19543733 tgggatttaaaacctctttggaaacctcgacattggaggaacccaaacc 19543781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 19986094 - 19986173
Alignment:
Q  16 caaaattgtagtttctatacttaggagg--ccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| ||||| |||||||  |||||||||||||||||| ||| ||||| | |||||| ||||||||||||    
T  19986094 caaaattgtagtttttatacataggaggggccaaaattgcaagtttttgaaacttaagaggggaaaagtgcactttagcc 19986173  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22776821 - 22776913
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| |||| ||||||||||||||| | ||| |||| |||||||||||||| ||| | ||| ||| ||| |||||| ||||||||||||    
T  22776821 taattcttagggggccaaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcactttagcc 22776913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 29931314 - 29931226
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | || ||||| ||| |||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  29931314 tcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 29931226  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 29980468 - 29980380
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||| ||||||||||||||| | || ||||| ||| |||||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  29980468 tcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcc 29980380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 54539843 - 54539755
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||| |||||||||||||| | || ||||| ||  |||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  54539843 tcttaggggatcaaaattgtagtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcc 54539755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 24516538 - 24516464
Alignment:
Q  15 ccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttt 89  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||| ||| ||| ||| | |||| ||||||||    
T  24516538 ccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 47615591 - 47615649
Alignment:
Q  35 cttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||| |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||    
T  47615591 cttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcactttagcc 47615649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 29932723 - 29932799
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  29932723 caaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29932799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 29981877 - 29981953
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||| |||  || |||||| ||||||||||||    
T  29981877 caaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcc 29981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 47614273 - 47614184
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||| |||||||||| ||||  ||||||||| |||||||||||||||||||| ||| |||  || | |||| |||||||||||||    
T  47614273 tcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgcactttagcca 47614184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 51470032 - 51469971
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||| |||||||||||||||||||| ||||||| ||  |||||| |||||||||||||    
T  51470032 tacttagggggccaaaattgcaagtttttgaaaattagggagggaaaagtgcactttagcca 51469971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 8456565 - 8456479
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    |||| |||| ||||||||||||||| | || ||||| | |||||||||||||||||| |||||| |||| | |||| |||||||||||    
T  8456565 tcttagggggccaaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaaatt-agggggaaaaagtgcactttagc 8456479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 12700250 - 12700175
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||||| |||||||||||||||||||| ||| |||  || || ||| ||||||||||||    
T  12700250 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagtta--ggggggaaagtgcactttagcc 12700175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 52840628 - 52840706
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    ||||||||| ||||  ||| |||||  ||||||||||||||||||| ||| ||| ||||||||||  ||||||||||||    
T  52840628 caaaattgttgttttgataattagggagccaaaattgcaagtttttgaaagttaggggaggaaaagggcactttagcca 52840706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34019163 - 34019241
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||||||||||||| | | ||| |||| || ||||||||||||||||| ||| ||||||  ||||||||| ||||||    
T  34019163 ggggaccaaaattgtagtgtttgtacctagggggtcaaaattgcaagtttttgaaagttaagg--ggaaaaatgtacttta 34019241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 534587 - 534531
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagttttt 61  Q
    |||| |||| ||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  534587 tcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagttttt 534531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 5001260 - 5001200
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| ||||||||||||||| |||| |||  || |||||||||| ||||||||||||    
T  5001260 tacttagggggccaaaattgcaagattttgaaagataggggaggaaaagtgcactttagcc 5001200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 11670466 - 11670406
Alignment:
Q  11 gggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaag 71  Q
    |||||||||||| |||||| |||||||||| | | |||||||||| ||||| |||||||||    
T  11670466 gggaccaaaattatagtttttatacttaggggactaaaattgcaaatttttgaaaattaag 11670406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 535807 - 535884
Alignment:
Q  17 aaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||| ||||||  ||||||| | | |||||||||||||||||| ||| ||| ||| |||||| | |||||||||||    
T  535807 aaaattatagttttaatacttaagggaccaaaattgcaagtttttgaaagttaggggtggaaaagtacactttagcca 535884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 12703518 - 12703600
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatta-agggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||||| | |||||||| |||||||||| ||| ||||| ||| ||| |||||  |||| ||||||||||||    
T  12703518 gggggccaaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagaggga--aaaagtgcactttagcc 12703600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 34940207 - 34940264
Alignment:
Q  12 ggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaatta 69  Q
    |||||||||||||| ||| ||||| || |||   ||||||||||||||||||||||||    
T  34940207 ggaccaaaattgtaatttttatacataagagattaaaattgcaagtttttaaaaatta 34940264  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 47610621 - 47610678
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||||| |||||||||||||||||||| ||| |||  || |||||| |||||||||    
T  47610621 tacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 47610678  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 51037627 - 51037535
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||| |||| | ||||||||||||| | | | |||  || ||||||||||| ||||| ||| |||||||| ||||| |||||||||||||    
T  51037627 taattcttagggggctaaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaaggga-gaaaagtgcactttagcca 51037535  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 5029724 - 5029783
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||||||||||||| |||| |||  | |||| |||||| ||||||||||||    
T  5029724 tacttaggaggccaaaattgcaagattttgaaagat-aggggggaaaagtgcactttagcc 5029783  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 46721233 - 46721321
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| |||||| ||||||||||||| | ||| |||| ||  ||||| |||| ||||||||| ||| |||  ||||| ||||||||||||    
T  46721233 tcttaggggactaaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttagggggagaaaagtgcactttagcc 46721321  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 47609757 - 47609697
Alignment:
Q  33 tacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||| || ||||||||||||||||| ||| ||| ||| |||||| |||| |||||||    
T  47609757 tacttagggggtcaaaattgcaagtttttgaaagttagggggggaaaagtgcattttagcc 47609697  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 53616070 - 53616114
Alignment:
Q  46 aaaattgcaagtttttaaaaattaagggaggaaaaatgcacttta 90  Q
    |||||| ||||| ||||||| |||||||||||||| |||||||||    
T  53616070 aaaattacaagtgtttaaaagttaagggaggaaaagtgcacttta 53616114  T

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Target: scaffold0019 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 61477 - 61559
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    |||| |||||||| |||||| | |||||||| ||| |||||||||||||||| |||||||||||||||||| |||||||||||    
T  61477 gggggccaaaattatagtttttgtacttagggggctaaaattgcaagtttttgaaaattaagggaggaaaagtgcactttagc 61559  T

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Target: scaffold0019; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 60167 - 60089
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||||||||||||| ||||| |||| || ||||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  60167 caaaattgtagtttttatacatagggggtcaaaattgcaagtttttaaaagttagaggaggaaaagtgcactttagcca 60089  T

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Target: scaffold2034 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 325 - 231
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagccat 95  Q
    |||||||| ||||||||||||| |||||| | ||| |||| | |||||||||||| ||||| ||| ||||||| || ||| ||||||||||||||    
T  325 taattcttaggggaccaaaattatagtttttgtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcactttagccat 231  T

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Target: scaffold2034; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 987 - 1058
Alignment:
Q  1 taattcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagg 72  Q
    ||||||||||||| |||||||| |||||| | ||| || | | |||||||||||| ||||||||| ||||||    
T  987 taattcttggggggccaaaattatagtttttgtacataagggaccaaaattgcaactttttaaaagttaagg 1058  T

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Target: scaffold0294 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 5462 - 5539
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| | |||||| | || ||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  5462 caaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggggaaaagtgcactttagcc 5539  T

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Target: scaffold0059 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 4754 - 4829
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagc 92  Q
    |||||||||||||||| || ||||| ||||||||||||| |||||||||| || ||||||| ||| |||||||||||    
T  4754 caaaattgtagtttctgtatttagggggccaaaattgcatgtttttaaaagtt-agggagggaaagtgcactttagc 4829  T

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Target: scaffold0059; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 3763 - 3694
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaaggga 74  Q
    |||| |||||| |||||| |||||||| |||| ||| |||||||||||||||||||| ||| ||| ||||    
T  3763 tcttaggggactaaaattatagtttctttactcagggggccaaaattgcaagtttttgaaagttagggga 3694  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 49457 - 49534
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||||||||||||| |||   |||| |||||||||||||| ||||| ||| |||||||  ||||| ||||||||||||    
T  49457 caaaattgtagtttttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcactttagcc 49534  T

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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 39395 - 39344
Alignment:
Q  42 ggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||||||| || ||||||||| ||||||| |||||| ||||||||||||    
T  39395 ggccaaaattgtaactttttaaaacttaaggggggaaaagtgcactttagcc 39344  T

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Target: scaffold1303 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 1516 - 1439
Alignment:
Q  16 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    ||||||| |||||| ||||| |||| || ||||||||||||||||| ||| |||  || |||||| | ||||||||||    
T  1516 caaaattatagtttttatacatagggggtcaaaattgcaagttttttaaagttagagggggaaaagtacactttagcc 1439  T

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Target: scaffold0632 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 3321 - 3408
Alignment:
Q  5 tcttgggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcc 93  Q
    |||| ||||||||||||| |||||| | ||| || | || |||||||| ||||||||  ||| |||||| |||||| ||||||||||||    
T  3321 tcttaggggaccaaaattatagtttttgtacctatggggtcaaaattgtaagttttt-gaaagtaaggggggaaaagtgcactttagcc 3408  T

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Target: scaffold0112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 37230 - 37147
Alignment:
Q  10 ggggaccaaaattgtagtttctatacttaggaggccaaaattgcaagtttttaaaaattaagggaggaaaaatgcactttagcca 94  Q
    |||| |||||||||| |||| | |||||||| || ||||||||||| ||||| ||||   |||| |||||| |||||||||||||    
T  37230 gggggccaaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagataggg-ggaaaagtgcactttagcca 37147  T

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