View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13472_low_1 (Length: 400)
Name: NF13472_low_1
Description: NF13472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13472_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 44 - 383
Target Start/End: Original strand, 38876792 - 38877122
Alignment:
| Q |
44 |
ctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattcatgctttcaagattaaatctc |
143 |
Q |
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| T |
38876792 |
ctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatgtttcgttcatgctttcaagattaaatctc |
38876891 |
T |
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| Q |
144 |
agttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaattaagctcaacaactatatattg- |
242 |
Q |
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| T |
38876892 |
agctttgcttttgctctttcaaatagagctctcaggtcctcactgcatgtcattcaaattattaaacacaag----ttaaggtcaacaactatatattgc |
38876987 |
T |
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| Q |
243 |
----caaatataatccatcatctatcaattataataaattgatgagttttagatgaacactatatatccaatgcgagttgcatagagttttcttgacatg |
338 |
Q |
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| T |
38876988 |
aaatcaaatataatccatcatctatcaagtataataaattgattact-----atg-----tctatatccaatgggagttgcatagagttttcttaacatg |
38877077 |
T |
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| Q |
339 |
aaattttatggttgtctagtaggtagtaaattatacactcagagc |
383 |
Q |
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| T |
38877078 |
aaattttatggttgtctagtaggtagtaaattatacactcagagc |
38877122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 16627942 - 16628168
Alignment:
| Q |
23 |
aaatgtccccccaccaatagcctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattc |
122 |
Q |
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| T |
16627942 |
aaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttc |
16628041 |
T |
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| Q |
123 |
atgctttcaagattaaatctcagttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaatta |
222 |
Q |
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| T |
16628042 |
atgctttccagattaactctcagctttccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaaacaca----tatta |
16628137 |
T |
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| Q |
223 |
agctcaacaactatatattgcaaatataatc |
253 |
Q |
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| T |
16628138 |
tggtcaacaattatatattgcaaatataatc |
16628168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 16636823 - 16637049
Alignment:
| Q |
23 |
aaatgtccccccaccaatagcctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattc |
122 |
Q |
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| T |
16636823 |
aaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttc |
16636922 |
T |
|
| Q |
123 |
atgctttcaagattaaatctcagttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaatta |
222 |
Q |
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| T |
16636923 |
atgctttccagattaactctcagctttccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaaacaca----tatta |
16637018 |
T |
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| Q |
223 |
agctcaacaactatatattgcaaatataatc |
253 |
Q |
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| T |
16637019 |
tggtcaacaattatatattgcaaatataatc |
16637049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 16615844 - 16616087
Alignment:
| Q |
23 |
aaatgtccccccaccaatagcctgttcataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatggttcattc |
122 |
Q |
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| T |
16615844 |
aaatgttccaccaccattagcatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatcaaccatggttgcttc |
16615943 |
T |
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| Q |
123 |
atgctttcaagattaaatctcagttttgcttttgctctttcaaatagagctctcaagtcgtcactgcatgtcattcaaattattaaacacaagttaatta |
222 |
Q |
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| T |
16615944 |
gtgctttgcagtttaagtctcagctttgcttttgctttctcaaaaagagctctcaggtcatcactgcatgt-aatcaaattatgaaacaca----aatta |
16616038 |
T |
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| Q |
223 |
agctcaacaactatatattgcaaatataatccatcatctatcaattata |
271 |
Q |
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| T |
16616039 |
tggtcaacagctatacattgcaaatattgtccatcatcaatcaagtata |
16616087 |
T |
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