View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13473_high_2 (Length: 505)
Name: NF13473_high_2
Description: NF13473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13473_high_2 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 505
Target Start/End: Complemental strand, 12933984 - 12933827
Alignment:
| Q |
348 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
446 |
Q |
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| T |
12933984 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
12933885 |
T |
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| Q |
447 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat |
505 |
Q |
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| T |
12933884 |
ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat |
12933827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
461 |
ggttgctccatataaatctcctcttccaaatctccatg |
498 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 505
Target Start/End: Original strand, 28608621 - 28608778
Alignment:
| Q |
348 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
446 |
Q |
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| T |
28608621 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
28608720 |
T |
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| Q |
447 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat |
505 |
Q |
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| T |
28608721 |
ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat |
28608778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 505
Target Start/End: Complemental strand, 14177231 - 14177097
Alignment:
| Q |
371 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
469 |
Q |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
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| Q |
470 |
atataaatctcctcttccaaatctccatgaagaaat |
505 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaat |
14177097 |
T |
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