View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13474_high_1 (Length: 378)
Name: NF13474_high_1
Description: NF13474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13474_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 9219608 - 9219257
Alignment:
| Q |
19 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcccacatatattgtcacaagttttagttaggattgaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| || |||||| |||||||| |
|
|
| T |
9219608 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagaataacccacatatattttcacaatttctagttaagattgaat |
9219509 |
T |
|
| Q |
119 |
cagttgcaaatactcgagtttgataaccgactctagaacaatatttagttacatttacctaagtttaagtcgaactcaagattactaaaagggccgaagg |
218 |
Q |
| |
|
|||| || ||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||| |||||| ||| ||||||||||| |||||| |
|
|
| T |
9219508 |
cagt-gcgaatactcgagtttgataactgactctagaacaatttttagttacatttatctaactttaagttgaactccagactactaaaagggtcgaagg |
9219410 |
T |
|
| Q |
219 |
gttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattg |
318 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219409 |
gttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattg |
9219310 |
T |
|
| Q |
319 |
aaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219309 |
aaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
9219257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 9162643 - 9162578
Alignment:
| Q |
19 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagccca |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9162643 |
aggaggttgtcatagacgagatattgttatcaaggttgccattggtatgtcactaaacatagccca |
9162578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9171440 - 9171392
Alignment:
| Q |
19 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
67 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9171440 |
aggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9171392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 9179422 - 9179374
Alignment:
| Q |
19 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
67 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9179422 |
aggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9179374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 9201131 - 9201067
Alignment:
| Q |
18 |
caggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcc |
82 |
Q |
| |
|
||||||||||||||| || |||| || ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9201131 |
caggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaagcatagcc |
9201067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
260 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
359 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||| || || | || ||| ||| || |||||||||| ||||||||||| | || | |||||||||| |
|
|
| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
|
| Q |
360 |
cggtttca |
367 |
Q |
| |
|
|| ||||| |
|
|
| T |
9162359 |
cgatttca |
9162352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University