View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13474_high_3 (Length: 237)

Name: NF13474_high_3
Description: NF13474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13474_high_3
NF13474_high_3
[»] chr2 (8 HSPs)
chr2 (1-183)||(423357-423539)
chr2 (175-224)||(423565-423614)
chr2 (173-211)||(40279181-40279219)
chr2 (113-158)||(41880646-41880692)
chr2 (113-158)||(15757820-15757865)
chr2 (173-213)||(1625884-1625924)
chr2 (173-213)||(29628789-29628829)
chr2 (169-213)||(41875699-41875743)
[»] chr8 (4 HSPs)
chr8 (113-167)||(1929948-1930002)
chr8 (182-212)||(37461135-37461165)
chr8 (176-213)||(24558840-24558877)
chr8 (173-213)||(9834835-9834875)
[»] chr4 (7 HSPs)
chr4 (113-165)||(4212813-4212865)
chr4 (111-165)||(27043951-27044005)
chr4 (108-150)||(43505824-43505866)
chr4 (113-158)||(44797763-44797808)
chr4 (113-158)||(47119089-47119134)
chr4 (173-213)||(35571677-35571717)
chr4 (173-213)||(49202629-49202669)
[»] chr7 (2 HSPs)
chr7 (173-213)||(12110344-12110384)
chr7 (173-213)||(5569682-5569722)
[»] chr5 (8 HSPs)
chr5 (111-158)||(12554332-12554379)
chr5 (173-211)||(6587155-6587193)
chr5 (108-158)||(32372490-32372540)
chr5 (111-152)||(3520300-3520341)
chr5 (176-212)||(2568645-2568681)
chr5 (173-213)||(5559709-5559749)
chr5 (173-213)||(10272477-10272517)
chr5 (113-165)||(42500356-42500408)
[»] chr3 (3 HSPs)
chr3 (113-158)||(47132248-47132293)
chr3 (176-212)||(21872318-21872354)
chr3 (113-165)||(42747898-42747950)
[»] chr1 (6 HSPs)
chr1 (173-213)||(7244704-7244744)
chr1 (173-213)||(23445318-23445358)
chr1 (173-213)||(25006080-25006120)
chr1 (173-213)||(27976579-27976619)
chr1 (169-213)||(29793762-29793806)
chr1 (173-213)||(49888751-49888791)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 423357 - 423539
Alignment:
Q  1 ccttctgagtcgacaacgtcctacaataattgattttgaacatattaatagatggaaaaagaacaacaacaacagggtcctcctagttacagccatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  423357 ccttctgagtcgacaacgtcctacaataattgattttgaacatattaatagatggaaaaagaacaacaacaacagggtcctcctagttacagccattgta 423456  T
Q  101 atagcaggggcatgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataagttgtaagttgttttggta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  423457 atagcaggggcatgtttggataaacaacttactttcaacttaaagcacaagcccttatgtataagttgtaagttgttttggta 423539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 423565 - 423614
Alignment:
Q  175 gttttggtataagctatatgttgttttcataagctatctcatattaactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  423565 gttttggtataagctatatgttgttttcataagctatctcatattaactt 423614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 40279181 - 40279219
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctat 211  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  40279181 ttgttttggtataagatataagttgttttcataagctat 40279219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 41880692 - 41880646
Alignment:
Q  113 tgtttggataaacaacttacttt-caacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  41880692 tgtttggataaacaacttactttgcagcttatagcacaagcgcttat 41880646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 15757865 - 15757820
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    |||||||||||||| |||| ||||| |||| |||||||||||||||    
T  15757865 tgtttggataaacagcttattttcagcttatagcacaagcgcttat 15757820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 1625884 - 1625924
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| ||||||| |||| ||||||||||||||||||||    
T  1625884 ttgttttcgtataagttataagttgttttcataagctatct 1625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 29628829 - 29628789
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| |||||| |||||||||||||    
T  29628829 ttgtttttgtataagctataagttgttctcataagctatct 29628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 41875743 - 41875699
Alignment:
Q  169 taagttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||    
T  41875743 taagttgttttcgtataagctgtaagctgttttcataagctatct 41875699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 1929948 - 1930002
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataagtt 167  Q
    ||||| |||||||||||||||| || |||| ||||||||||||||||||||||||    
T  1929948 tgttttgataaacaacttacttgcagcttatagcacaagcgcttatgtataagtt 1930002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 37461135 - 37461165
Alignment:
Q  182 tataagctatatgttgttttcataagctatc 212  Q
    |||||||||||||||||||||||||||||||    
T  37461135 tataagctatatgttgttttcataagctatc 37461165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 24558840 - 24558877
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatct 213  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  24558840 ttttcgtataagctataagttgttttcataagctatct 24558877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 9834875 - 9834835
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  9834875 ttgttttcatataagctataagttgttttcataagctatct 9834835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 4212813 - 4212865
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    ||||||||||||||||||| ||||| |||| |||||||||| |||||||||||    
T  4212813 tgtttggataaacaacttattttcagcttatagcacaagcgattatgtataag 4212865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 27044005 - 27043951
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||||||||||  | || |||| ||||| ||||||||||||||||    
T  27044005 catgtttggataaacaacttatctacagcttatagcactagcgcttatgtataag 27043951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 43505824 - 43505866
Alignment:
Q  108 gggcatgtttggataaacaacttactttcaacttaaagcacaa 150  Q
    |||||||||||||||||||||||| || ||||||| |||||||    
T  43505824 gggcatgtttggataaacaacttatttgcaacttatagcacaa 43505866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 44797763 - 44797808
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||    
T  44797763 tgtttggataaacaacttatttgcaacttatagcacaagcgattat 44797808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 47119134 - 47119089
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| || ||||||| ||||||||| |||||    
T  47119134 tgtttggataaacaacttatttgcaacttatagcacaagcacttat 47119089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 35571717 - 35571677
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  35571717 ttgttttcgtataagctataagctgttttcataagctatct 35571677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 49202629 - 49202669
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  49202629 ttgtttcggtataagctataagttgttttcgtaagctatct 49202669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 12110344 - 12110384
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  12110344 ttgttttggtataagctataagctgttttcataagctatct 12110384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 5569722 - 5569682
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  5569722 ttgttttggtataagttataagttgttttcataagttatct 5569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 12554332 - 12554379
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||||| || || |||||||||||| |||||||    
T  12554332 catgtttggataaacaacttatttgcagcttaaagcacaaacgcttat 12554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 6587193 - 6587155
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctat 211  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  6587193 ttgttttcgtataagctataagttgttttcataagctat 6587155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 32372490 - 32372540
Alignment:
Q  108 gggcatgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    |||||||||||||||||||||||| || || |||| ||||||||| |||||    
T  32372490 gggcatgtttggataaacaacttatttgcagcttatagcacaagcacttat 32372540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 3520300 - 3520341
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagc 152  Q
    ||||||||||||||||||||| ||||| |||| |||||||||    
T  3520300 catgtttggataaacaacttattttcagcttatagcacaagc 3520341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 2568645 - 2568681
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatc 212  Q
    |||| |||||||||||| |||||||||||||||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatc 2568681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 5559709 - 5559749
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||| ||||||||    
T  5559709 ttgttttagtataagctataagttgttttcattagctatct 5559749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 10272517 - 10272477
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  10272517 ttgttttcgtataagctataagttgttttcataagccatct 10272477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 42500408 - 42500356
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||| |||| || || |||| |||||||||||| |||||||||    
T  42500408 tgtttggataaacagcttatttccagcttatagcacaagcgctaatgtataag 42500356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 47132248 - 47132293
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  47132248 tgtttggataaacaacttattttcaccttatagcacaagcacttat 47132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 21872354 - 21872318
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatc 212  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  21872354 ttttgatataagctataagttgttttcataagctatc 21872318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 42747950 - 42747898
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||| |||| || ||||||| ||||||| ||| ||||||||||    
T  42747950 tgtttggataaacagcttatttgcaacttatagcacaaacgcctatgtataag 42747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 7244744 - 7244704
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  7244744 ttgttttcgtataagctatacgttgttttcataagcgatct 7244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 23445318 - 23445358
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  23445318 ttgtttttgtataagccataagttgttttcataagctatct 23445358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 25006120 - 25006080
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  25006120 ttgttttcatataagctataagttgttttcataagctatct 25006080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 27976579 - 27976619
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| ||||| |||||| ||||||||||||||||||||    
T  27976579 ttgtttttgtatatgctataagttgttttcataagctatct 27976619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 29793762 - 29793806
Alignment:
Q  169 taagttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||| |||||||||||| ||||  ||||||||||||||    
T  29793762 taagttgttttcgtataagctataagttgagttcataagctatct 29793806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 49888751 - 49888791
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  49888751 ttgttttcgtataagctattagttgttttcataagctatct 49888791  T

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