View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13474_low_3 (Length: 237)

Name: NF13474_low_3
Description: NF13474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13474_low_3
NF13474_low_3
[»] chr2 (8 HSPs)
chr2 (1-183)||(423357-423539)
chr2 (175-224)||(423565-423614)
chr2 (173-211)||(40279181-40279219)
chr2 (113-158)||(41880646-41880692)
chr2 (113-158)||(15757820-15757865)
chr2 (173-213)||(1625884-1625924)
chr2 (173-213)||(29628789-29628829)
chr2 (169-213)||(41875699-41875743)
[»] chr8 (4 HSPs)
chr8 (113-167)||(1929948-1930002)
chr8 (182-212)||(37461135-37461165)
chr8 (176-213)||(24558840-24558877)
chr8 (173-213)||(9834835-9834875)
[»] chr4 (7 HSPs)
chr4 (113-165)||(4212813-4212865)
chr4 (111-165)||(27043951-27044005)
chr4 (108-150)||(43505824-43505866)
chr4 (113-158)||(44797763-44797808)
chr4 (113-158)||(47119089-47119134)
chr4 (173-213)||(35571677-35571717)
chr4 (173-213)||(49202629-49202669)
[»] chr7 (2 HSPs)
chr7 (173-213)||(12110344-12110384)
chr7 (173-213)||(5569682-5569722)
[»] chr5 (8 HSPs)
chr5 (111-158)||(12554332-12554379)
chr5 (173-211)||(6587155-6587193)
chr5 (108-158)||(32372490-32372540)
chr5 (111-152)||(3520300-3520341)
chr5 (176-212)||(2568645-2568681)
chr5 (173-213)||(5559709-5559749)
chr5 (173-213)||(10272477-10272517)
chr5 (113-165)||(42500356-42500408)
[»] chr3 (3 HSPs)
chr3 (113-158)||(47132248-47132293)
chr3 (176-212)||(21872318-21872354)
chr3 (113-165)||(42747898-42747950)
[»] chr1 (6 HSPs)
chr1 (173-213)||(7244704-7244744)
chr1 (173-213)||(23445318-23445358)
chr1 (173-213)||(25006080-25006120)
chr1 (173-213)||(27976579-27976619)
chr1 (169-213)||(29793762-29793806)
chr1 (173-213)||(49888751-49888791)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 423357 - 423539
Alignment:
Q  1 ccttctgagtcgacaacgtcctacaataattgattttgaacatattaatagatggaaaaagaacaacaacaacagggtcctcctagttacagccatcgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  423357 ccttctgagtcgacaacgtcctacaataattgattttgaacatattaatagatggaaaaagaacaacaacaacagggtcctcctagttacagccattgta 423456  T
Q  101 atagcaggggcatgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataagttgtaagttgttttggta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  423457 atagcaggggcatgtttggataaacaacttactttcaacttaaagcacaagcccttatgtataagttgtaagttgttttggta 423539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 423565 - 423614
Alignment:
Q  175 gttttggtataagctatatgttgttttcataagctatctcatattaactt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  423565 gttttggtataagctatatgttgttttcataagctatctcatattaactt 423614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 40279181 - 40279219
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctat 211  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  40279181 ttgttttggtataagatataagttgttttcataagctat 40279219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 41880692 - 41880646
Alignment:
Q  113 tgtttggataaacaacttacttt-caacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||    
T  41880692 tgtttggataaacaacttactttgcagcttatagcacaagcgcttat 41880646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 15757865 - 15757820
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    |||||||||||||| |||| ||||| |||| |||||||||||||||    
T  15757865 tgtttggataaacagcttattttcagcttatagcacaagcgcttat 15757820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 1625884 - 1625924
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| ||||||| |||| ||||||||||||||||||||    
T  1625884 ttgttttcgtataagttataagttgttttcataagctatct 1625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 29628829 - 29628789
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| |||||| |||||||||||||    
T  29628829 ttgtttttgtataagctataagttgttctcataagctatct 29628789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 41875743 - 41875699
Alignment:
Q  169 taagttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||| ||||||||| || | ||||||||||||||||||    
T  41875743 taagttgttttcgtataagctgtaagctgttttcataagctatct 41875699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 1929948 - 1930002
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataagtt 167  Q
    ||||| |||||||||||||||| || |||| ||||||||||||||||||||||||    
T  1929948 tgttttgataaacaacttacttgcagcttatagcacaagcgcttatgtataagtt 1930002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 37461135 - 37461165
Alignment:
Q  182 tataagctatatgttgttttcataagctatc 212  Q
    |||||||||||||||||||||||||||||||    
T  37461135 tataagctatatgttgttttcataagctatc 37461165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 24558840 - 24558877
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatct 213  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  24558840 ttttcgtataagctataagttgttttcataagctatct 24558877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 9834875 - 9834835
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  9834875 ttgttttcatataagctataagttgttttcataagctatct 9834835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 4212813 - 4212865
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    ||||||||||||||||||| ||||| |||| |||||||||| |||||||||||    
T  4212813 tgtttggataaacaacttattttcagcttatagcacaagcgattatgtataag 4212865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 27044005 - 27043951
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||||||||||  | || |||| ||||| ||||||||||||||||    
T  27044005 catgtttggataaacaacttatctacagcttatagcactagcgcttatgtataag 27043951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 43505824 - 43505866
Alignment:
Q  108 gggcatgtttggataaacaacttactttcaacttaaagcacaa 150  Q
    |||||||||||||||||||||||| || ||||||| |||||||    
T  43505824 gggcatgtttggataaacaacttatttgcaacttatagcacaa 43505866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 44797763 - 44797808
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||    
T  44797763 tgtttggataaacaacttatttgcaacttatagcacaagcgattat 44797808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 47119134 - 47119089
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| || ||||||| ||||||||| |||||    
T  47119134 tgtttggataaacaacttatttgcaacttatagcacaagcacttat 47119089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 35571717 - 35571677
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  35571717 ttgttttcgtataagctataagctgttttcataagctatct 35571677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 49202629 - 49202669
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||| ||||||||||||| ||||||||| ||||||||||    
T  49202629 ttgtttcggtataagctataagttgttttcgtaagctatct 49202669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 12110344 - 12110384
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  12110344 ttgttttggtataagctataagctgttttcataagctatct 12110384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 5569722 - 5569682
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  5569722 ttgttttggtataagttataagttgttttcataagttatct 5569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 12554332 - 12554379
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||||| || || |||||||||||| |||||||    
T  12554332 catgtttggataaacaacttatttgcagcttaaagcacaaacgcttat 12554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 6587193 - 6587155
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctat 211  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  6587193 ttgttttcgtataagctataagttgttttcataagctat 6587155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 32372490 - 32372540
Alignment:
Q  108 gggcatgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    |||||||||||||||||||||||| || || |||| ||||||||| |||||    
T  32372490 gggcatgtttggataaacaacttatttgcagcttatagcacaagcacttat 32372540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 3520300 - 3520341
Alignment:
Q  111 catgtttggataaacaacttactttcaacttaaagcacaagc 152  Q
    ||||||||||||||||||||| ||||| |||| |||||||||    
T  3520300 catgtttggataaacaacttattttcagcttatagcacaagc 3520341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 2568645 - 2568681
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatc 212  Q
    |||| |||||||||||| |||||||||||||||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatc 2568681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 5559709 - 5559749
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||| ||||||||    
T  5559709 ttgttttagtataagctataagttgttttcattagctatct 5559749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 10272517 - 10272477
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  10272517 ttgttttcgtataagctataagttgttttcataagccatct 10272477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 42500408 - 42500356
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||| |||| || || |||| |||||||||||| |||||||||    
T  42500408 tgtttggataaacagcttatttccagcttatagcacaagcgctaatgtataag 42500356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 47132248 - 47132293
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttat 158  Q
    ||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  47132248 tgtttggataaacaacttattttcaccttatagcacaagcacttat 47132293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 21872354 - 21872318
Alignment:
Q  176 ttttggtataagctatatgttgttttcataagctatc 212  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  21872354 ttttgatataagctataagttgttttcataagctatc 21872318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 42747950 - 42747898
Alignment:
Q  113 tgtttggataaacaacttactttcaacttaaagcacaagcgcttatgtataag 165  Q
    |||||||||||||| |||| || ||||||| ||||||| ||| ||||||||||    
T  42747950 tgtttggataaacagcttatttgcaacttatagcacaaacgcctatgtataag 42747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 7244744 - 7244704
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  7244744 ttgttttcgtataagctatacgttgttttcataagcgatct 7244704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 23445318 - 23445358
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  23445318 ttgtttttgtataagccataagttgttttcataagctatct 23445358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 25006120 - 25006080
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  25006120 ttgttttcatataagctataagttgttttcataagctatct 25006080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 27976579 - 27976619
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| ||||| |||||| ||||||||||||||||||||    
T  27976579 ttgtttttgtatatgctataagttgttttcataagctatct 27976619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 29793762 - 29793806
Alignment:
Q  169 taagttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||||||| |||||||||||| ||||  ||||||||||||||    
T  29793762 taagttgttttcgtataagctataagttgagttcataagctatct 29793806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 49888751 - 49888791
Alignment:
Q  173 ttgttttggtataagctatatgttgttttcataagctatct 213  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  49888751 ttgttttcgtataagctattagttgttttcataagctatct 49888791  T

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