View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13475_high_1 (Length: 725)

Name: NF13475_high_1
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13475_high_1
NF13475_high_1
[»] chr4 (1 HSPs)
chr4 (16-706)||(50392717-50393408)


Alignment Details
Target: chr4 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 16 - 706
Target Start/End: Complemental strand, 50393408 - 50392717
Alignment:
Q  16 aaacaaacaaatcaaagacgaattttcctcttctttttgcccctaaatagagaacagaattgtgcaaagtgatttacaccatagttgaagaaactcatgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50393408 aaacaaacaaatcaaagacgaattttcctcttctttttgcccctaaatagagaacagaattgtgcaaagtgatttacaccatagttgaagaaactcatgg 50393309  T
Q  116 cacgctatgttacgatcattatgaaaggctaggaacgatcacattttcaataatagtgtggtgtcagcgacaaaagttatggataaaacaaaggtgttgg 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50393308 cacgctatgttacgatcattatggaaggctaggaacaatcacattttcaataatagtgtggtgtcagcgacaaaagtcatggataaaacaaaggtgttgg 50393209  T
Q  216 catggcgttggtttttagtacgtttggcgaagaaccagtgcctttattatgaatggttatgggaccctattagttgcttggcaggatagcaggtggagtt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50393208 catggcgttggtttttagtacgtttggcgaagaaccagtgcctctattatgaatggttatgggaccctattagttgcttggcaggatagcaggtggagtt 50393109  T
Q  316 tagctagttcttgagacaggaggctgtggttttggttgtattgtctgcataagtttttctttctgctgcatcttggacagttgttttcggctgctgtacc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50393108 tagctagttcttgagacaggaggctgtggttttggttgtattgtctgcataagtttttctttctgctgcatcttggacagttgttttcggctgctgtacc 50393009  T
Q  416 ttgctcattgcaggttttgtttggatgtgtggaattgg-ttttccagtcagctgcaggtttttgattttgcaagtgaatgactttttgttatgtttaagt 514  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50393008 ttgctcattgcaggttttgtttggatgtgtggaattggtttttctagtcagctgcaggtttttgattttgcaagtgaatgactttttgttatgtttaagt 50392909  T
Q  515 ctgctactattcttaatttaaggggatatggtggctgtttcttttgtagtagatgcatggtgcctagtcatcttgggtggtgtgagttatatcagtttgg 614  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50392908 ctgctactactcttaatttaaggggatatggtggctgtttcttttgtagtagatgcatggtgcctagttatcttgggtggtgtgagttatatcagtttgg 50392809  T
Q  615 ttttatgcacagggctctgttgccagtgtgcttttgttttatagatgtgggtttgttagccttggtttctcacctgcagcggcgtatatttt 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392808 ttttatgcacagggctctgttgccagtgtgcttttgttttatagatgtgggtttgttagccttggtttctcacctgcagcggcgtatatttt 50392717  T

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