View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_high_3 (Length: 553)
Name: NF13475_high_3
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 102 - 553
Target Start/End: Original strand, 47372952 - 47373394
Alignment:
| Q |
102 |
gaaaattcatcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
201 |
Q |
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| T |
47372952 |
gaaaattcatcttcattttgtagttgttcgttttcatc---------gtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
47373042 |
T |
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| Q |
202 |
tagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
301 |
Q |
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| T |
47373043 |
tagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
47373142 |
T |
|
| Q |
302 |
ccttccatctccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
401 |
Q |
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| T |
47373143 |
ccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
47373242 |
T |
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| Q |
402 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagat |
501 |
Q |
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| T |
47373243 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagat |
47373342 |
T |
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| Q |
502 |
tttctgtgcacaattcaagactctttggattcagaaccaatgaggaacactt |
553 |
Q |
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| T |
47373343 |
tttctgtgcacaattcaagactctttggactcagaaccaaagaggaacactt |
47373394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 111 - 549
Target Start/End: Complemental strand, 47385974 - 47385539
Alignment:
| Q |
111 |
tcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcat |
210 |
Q |
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| T |
47385974 |
tctttattatgtggtttttcattttcatctatgacatcatcatcatcaacatcaacatcctcttcttgttc------cgggtcaaaacttgtagtctcat |
47385881 |
T |
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| Q |
211 |
ttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatc |
310 |
Q |
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| T |
47385880 |
ttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatc |
47385781 |
T |
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| Q |
311 |
tccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaact |
410 |
Q |
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| T |
47385780 |
ttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatact |
47385681 |
T |
|
| Q |
411 |
tgagaacaaggttgtctttg---ctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctg |
507 |
Q |
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| T |
47385680 |
ggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccg |
47385581 |
T |
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| Q |
508 |
tgcacaattcaagactctttggattcagaaccaatgaggaac |
549 |
Q |
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| T |
47385580 |
tacataattcaaggctctttggactcatagccaaagaggaac |
47385539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
245 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacg |
316 |
Q |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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