View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_high_9 (Length: 300)
Name: NF13475_high_9
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 47333338 - 47333057
Alignment:
| Q |
1 |
ttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcataggtgaactttgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47333338 |
ttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccatactttcataggtgaactttgttc |
47333239 |
T |
|
| Q |
101 |
atgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccaggtaaagtttca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333238 |
atgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccaggtaaagtttca |
47333139 |
T |
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| Q |
201 |
acaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333138 |
acaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaat |
47333057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
20 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
79 |
Q |
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|||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 17841900 - 17841841
Alignment:
| Q |
20 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
79 |
Q |
| |
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|||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
17841900 |
aggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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