View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_low_14 (Length: 241)
Name: NF13475_low_14
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 28249997 - 28250202
Alignment:
| Q |
28 |
accacactactttcactaccatttcaaaatttaaataagcgagtccaaaaacttaacttaattgtcaatgtcgattatagtgtattattttgttattttg |
127 |
Q |
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| T |
28249997 |
accacactactttcactaccatttcaaaatttaaataatcgagtccaaaaacttaacttaattgtcaatgtcgattatagtgtattat--------tttg |
28250088 |
T |
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| Q |
128 |
aaggaatattttcctttggttttagaattaactcaaccgacaaagttataacaaagcaatgaagctataacttagtacaaaaaactgaagcatcatcatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28250089 |
aaggaatattttcctttggttttagaattaactcaaccgacaaagttataacaaagcaatgaagctataacttagtacaaaaaactgaagcatcatcatt |
28250188 |
T |
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| Q |
228 |
cacttacaacggtc |
241 |
Q |
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|||||||||||||| |
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| T |
28250189 |
cacttacaacggtc |
28250202 |
T |
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