View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_low_2 (Length: 586)
Name: NF13475_low_2
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 29 - 569
Target Start/End: Original strand, 48487137 - 48487677
Alignment:
| Q |
29 |
ataggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatccactagtttgaaaatctctt |
128 |
Q |
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| T |
48487137 |
ataggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatccactagtttgaaaatctctt |
48487236 |
T |
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| Q |
129 |
tcccttttttacccttttcatcaaaacaatttccactctccactttaaccaataacatacgactccctttaaccgtctttttaatgctcttaaacgactt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487237 |
tcccttttttacccttttcatcaaaacaatttccactctccgctttaaccaataacattcgactccctttaaccgtctttttaatgctcttaaacgactt |
48487336 |
T |
|
| Q |
229 |
agcatgcttctcataatcaaattcatcaaaaccattatcactctcttttttcggatcgcgtttgttttcctttcccttatttacaaatctaattccagtg |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
48487337 |
agcatgcttctcataatcaaattcatcaaaaccattatcactctcttttttcggatcgcatttgttttcctttcccttatttacaaatctaattacagta |
48487436 |
T |
|
| Q |
329 |
tcactactctcaccttcaaaactgagcttggagttttgtatttgtcgattattcttcttctgtgtaccgagaagtacggagtccttgaacttggatggaa |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487437 |
tcactactctcaccttcaaaactgagcttggagttttgtatttgtcgattattcttcttctgtgtaccgagaagtacggagtccttgaacttggatggaa |
48487536 |
T |
|
| Q |
429 |
gcattttaacgcggcctctggatgatagcgacaatggaggtgcattttcagctacaatattcaaatctgtggaagctgaattggagtggatctcgccatc |
528 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487537 |
gcattttaacgcggcctctggatgctcgcgacaatggaggtgcattttcagctacaatattcaaatctgtggaagctgaattggagtggatctcgccatc |
48487636 |
T |
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| Q |
529 |
atggaaagagtaaaaggcgttattgagtttgggcttcttct |
569 |
Q |
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| T |
48487637 |
atggaaagagtaaaaggcgttattgagtttgggcttcttct |
48487677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 10032640 - 10032571
Alignment:
| Q |
31 |
aggatcaatgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaa |
100 |
Q |
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||||||||| || ||| | ||||| |||||||| |||| || ||||| ||||||||||||||||||||| |
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| T |
10032640 |
aggatcaatcaccacaccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaa |
10032571 |
T |
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