View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_low_4 (Length: 535)
Name: NF13475_low_4
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 40653737 - 40654247
Alignment:
| Q |
18 |
aaggaatccagtattcgtccttaccgacactcttgccgtcgaagcgctccaaaagatggtgcaaggttggtcatacatgtcacaatgtttatcattactt |
117 |
Q |
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| T |
40653737 |
aaggaatccagtattcgtccttaccgacactcttgccgtcgaagcactccaaaagatggtgcaaggttggtcatacatgtcacaatgtttatcattactt |
40653836 |
T |
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| Q |
118 |
catgctatatgctatttgcctgttacattatgctgtcgtgccttctgaagacaaggctgatttatgttttgcagggaaattcagacatttaccggtagtg |
217 |
Q |
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| T |
40653837 |
catgctatatgctatttgcctgttacattatgccgtcgtgccttctgaagacaaggctgatttatgttttgcagggaaattcagacatttaccggtagtg |
40653936 |
T |
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| Q |
218 |
gagaatggagaagtggttgctatccttgacatagccaagtgtttatatgatgccattgctcgtatggaaagggcagctgagaaaggaaaggcaattgcag |
317 |
Q |
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| T |
40653937 |
gagaatggagaagtggttgctatccttgacatagccaagtgtttatatgatgccattgctcgtatggaaagggcagctgagaaaggaaaggcaattgcag |
40654036 |
T |
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| Q |
318 |
cagctgttgaaggtatcgacaaacactggggagcatctgcctctggtttgtagattaatttctttttgcacatcttactctcttgtttctaattaggaca |
417 |
Q |
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| T |
40654037 |
cagctgttgaaggtatcgacaaacactggggagcatctgcctctggtttgtagattaatttctttttgcacatcttactctcttgtttctaattaggaca |
40654136 |
T |
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| Q |
418 |
acattaacagtgttttaagctaggctcccattttccatatcagccaaattttgtttcatgttaatttggtctatgtacaggatccaattcatcattcatt |
517 |
Q |
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| T |
40654137 |
acattagcagtgttttaagctaggctcccattttccatatcagccaaattttgtttcatgttaatttggtctatgtacaggatccaattcatcattcatt |
40654236 |
T |
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| Q |
518 |
gatattcttcg |
528 |
Q |
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| T |
40654237 |
gatactcttcg |
40654247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 349
Target Start/End: Original strand, 45428340 - 45428500
Alignment:
| Q |
189 |
cagggaaattcagacatttaccggtagtggagaatggagaagtggttgctatccttgacatagccaagtgtttatatgatgccattgctcgtatggaaag |
288 |
Q |
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|||||||||| || ||| |||| || ||||||||||||||||| | ||| | || |||||||| |||||||| | ||||||| ||| ||||||||||| |
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| T |
45428340 |
cagggaaatttaggcatctacctgtggtggagaatggagaagttttggctttactcgacatagcaaagtgtttgcacgatgccactgcacgtatggaaag |
45428439 |
T |
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| Q |
289 |
ggcagctgagaaaggaaaggcaattgcagcagctgttgaaggtatcgacaaacactgggga |
349 |
Q |
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| T |
45428440 |
ggccgcagagaaaggaaaagcaattgcagcagctgttgaaggagttgaaaaacactgggga |
45428500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 45428193 - 45428259
Alignment:
| Q |
22 |
aatccagtattcgtccttaccgacactcttgccgtcgaagcgctccaaaagatggtgcaaggttggt |
88 |
Q |
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| T |
45428193 |
aatccggtatttgtcctttctgaaactcttgctgtggaagccctccaaaagatggtgcaaggttggt |
45428259 |
T |
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