View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13475_low_6 (Length: 465)
Name: NF13475_low_6
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 22971290 - 22971720
Alignment:
| Q |
15 |
catcatcaagtaataaaggtaattttcttgagcttctggattttcttgttaatcataatgaaactattcgtgatgtttggaagaatactagtggaaatct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
22971290 |
catcatcaagtaataaaggtaattttcttgagcttctagattttcttgttaatcataatgaa-ctattcgtgatgtttggaagaatactagtggaaatct |
22971388 |
T |
|
| Q |
115 |
taagctaacatctcctcaaattcaaaaggat--tgttagagttgttgcctatgaaactactatagcaatacttcatgatctaggagatgatttctttgct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
22971389 |
taagctaacatctcctcaaattcaaaaggatattgttagagttgctgcctatgaaactactatagtaatacttcatgatctaggagatgatttctttgct |
22971488 |
T |
|
| Q |
213 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22971489 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttg |
22971588 |
T |
|
| Q |
313 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttggaaaatatgggttgagtttgtcaaggatacgtggaca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
22971589 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttgcaaaatatgggttgagtttgtcaaggatacgtggaca |
22971688 |
T |
|
| Q |
413 |
aggatatgatggggcaagcaacatgcgaggtg |
444 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
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|
| T |
22971689 |
aggatatgatggcgcaagcaacatgcgaggtg |
22971720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 22963046 - 22963476
Alignment:
| Q |
15 |
catcatcaagtaataaaggtaattttcttgagcttctggattttcttgttaatcataatgaaactattcgtgatgtttggaagaatactagtggaaatct |
114 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
22963046 |
catcatcaaataataaaggtaattttctcgagcttctggattttcttgttaatcataatgaaactatttgtgatgtttggaagaatactagtggaaatct |
22963145 |
T |
|
| Q |
115 |
taagctaacatctcctcaaattcaaaaggat--tgttagagttgttgcctatgaaactactatagcaatacttcatgatctaggagatgatttctttgct |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
22963146 |
taagctaacatctactcaaattcaaaaggatattgttagagctgctgcctatgaaactactatagcaata-ttcatgatctaggagatgatttctttgct |
22963244 |
T |
|
| Q |
213 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22963245 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagggttttcttg |
22963344 |
T |
|
| Q |
313 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttggaaaatatgggttgagtttgtcaaggatacgtggaca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
22963345 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttgcaaaatatgggttgagtttgtgaaggatacgtggaca |
22963444 |
T |
|
| Q |
413 |
aggatatgatggggcaagcaacatgcgaggtg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22963445 |
aggatatgatggggcaagcaacatgcgaggtg |
22963476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 21879335 - 21878905
Alignment:
| Q |
15 |
catcatcaagtaataaaggtaattttcttgagcttctggattttcttgttaatcataatgaaactattcgtgatgtttggaagaatactagtggaaatct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879335 |
catcatcaagtaataaaggtaattttcttgagcttctagattttcttgttaatcataatgaa-ctattcgtgatgtttggaagaatactagtggaaatct |
21879237 |
T |
|
| Q |
115 |
taagctaacatctcctcaaattcaaaaggat--tgttagagttgttgcctatgaaactactatagcaatacttcatgatctaggagatgatttctttgct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21879236 |
taagctaacatctcctcaaattcaaaaggatattgttagagttgctgcctatgaaactactatagtaatacttcatgatctaggagatgatttctttgct |
21879137 |
T |
|
| Q |
213 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879136 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttg |
21879037 |
T |
|
| Q |
313 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttggaaaatatgggttgagtttgtcaaggatacgtggaca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879036 |
gtattgttgaggtttctaatactagtgctttatccttgaaatcggctttggaggcattgcttgcaaaatatgggttgagtttgtcaaggatacgtggaca |
21878937 |
T |
|
| Q |
413 |
aggatatgatggggcaagcaacatgcgaggtg |
444 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
21878936 |
aggatatgatggcgcaagcaacatgcgaggtg |
21878905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 18549385 - 18549327
Alignment:
| Q |
219 |
attgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgt |
277 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||| ||||| |||||| ||||| |
|
|
| T |
18549385 |
attgatgaatctcgagacatttcaaataaagagcaaatggctgttgttttacgctatgt |
18549327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 54 - 441
Target Start/End: Complemental strand, 31078595 - 31078204
Alignment:
| Q |
54 |
attttcttgttaatcataatgaaactattcgtgatgtttggaagaatactagtggaaatcttaagctaacatctcctcaaattcaaaagga--ttgttag |
151 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| | ||||| |
|
|
| T |
31078595 |
attttcttgttaaccataatgaaactactcgtgaagtttggaagaatactcgtgaaaatcttgagctaacatctcctcaaattcaaaaggaaatggttag |
31078496 |
T |
|
| Q |
152 |
agttgttgcctatgaaactactatagcaatacttcatgatctaggagatgatttctttgctattatgattgatgaatctcgagatatctcagttaaagag |
251 |
Q |
| |
|
||||| |||| || ||| ||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
31078495 |
agttgatgcccataaaattactaaagcaatacttcatgatgtaggagatgatttctttgttattacgattgatgaatcttgagatatctcagttaaggag |
31078396 |
T |
|
| Q |
252 |
caaatggttgttgctttacgttatgttaataaaaaa--ggcaaagttgttgagcgttttcttggtattgttgaggtttctaatactagtgctttatcctt |
349 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
31078395 |
taaatggttgttgctttacgttatgttagtaaaaaaaaggcaaagttgttgagcattttcttggtattactgaggtttataatactagtgcattatcctt |
31078296 |
T |
|
| Q |
350 |
gaaatcggctttggaggcattgcttggaaaatatgggttgagtttgtcaaggatacgtggacaaggatatgatggggcaagcaacatgcgag |
441 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
31078295 |
gaaatcggctttggagtcattgcttgcaaaatatgggttaagtttgtcaaggatacatggacaaggatatgatggagcaagcaacatgcgag |
31078204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 22328419 - 22328154
Alignment:
| Q |
15 |
catcatcaagtaataaaggtaattttcttgagcttctggattttcttgttaatcataatgaaactattcgtgatgtttggaagaatactagtggaaatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
22328419 |
catcatcaagtaataaaggtaattttctagaacttgtggattttcttgttaaccataatgaaactattcctgaggtttggaagaatactagtggaaatct |
22328320 |
T |
|
| Q |
115 |
taagctaacatctcctcaaattcaaaagg--attgttagagttgttgcctatgaaactactatagcaatacttcatgatctaggagatgatttctttgct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22328319 |
taagctaacatctcctcaaattcaaaaggatattgttaaagttgctgcccatgaaactactaaagcaatacttcatgatctaggagatgatttctttgct |
22328220 |
T |
|
| Q |
213 |
attatgattgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgtt |
278 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
22328219 |
attatgattgatgaatctcgggatatctcaattaaggagaaaatggttgttgctttacattatgtt |
22328154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 22328145 - 22328086
Alignment:
| Q |
345 |
tccttgaaatcggctttggaggcattgcttggaaaatatgggttgagtttgtcaaggata |
404 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| ||||||| |||| |||||||||| |
|
|
| T |
22328145 |
tccttgaaatcaactttggaggcattgcttgcaaaacatgggttaagttggtcaaggata |
22328086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 4790724 - 4790666
Alignment:
| Q |
219 |
attgatgaatctcgagatatctcagttaaagagcaaatggttgttgctttacgttatgt |
277 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||| ||||| |||||| ||||| |
|
|
| T |
4790724 |
attgatgaatctcgagacatttcaaataaagagcaaatggctgttgttttacgctatgt |
4790666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 10352577 - 10352644
Alignment:
| Q |
253 |
aaatggttgttgctttacgttatgttaataaaaaaggcaaagttgttgagcgttttcttggtattgtt |
320 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || | ||||||| ||||| |||||||||||| |
|
|
| T |
10352577 |
aaatggttgttgctttgcgttatgttaacaaaaagggaagtattgttgaacgtttacttggtattgtt |
10352644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 49602007 - 49601975
Alignment:
| Q |
412 |
aaggatatgatggggcaagcaacatgcgaggtg |
444 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
49602007 |
aaggatataatggggcaagcaacatgcgaggtg |
49601975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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