View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13475_low_7 (Length: 374)
Name: NF13475_low_7
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13475_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 45378357 - 45378009
Alignment:
| Q |
14 |
atcaaatcagattatttgggagatatagtcacacacacatatgactaaattgtggactttgatcacccagcttcattcccttgctgggtatatgcacttt |
113 |
Q |
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| T |
45378357 |
atcaaatcagattatttgggagatatagtcacacacacatatgactaagttgtggactttgatcacccagcttcattcccttgctgggtatatgcacttt |
45378258 |
T |
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| Q |
114 |
tgaacaacctcttttatgttcaatattcacttactatgtactaattcatttttcagtatgtattattaattgtttgtgtgtaa-nnnnnnnnngcaggcc |
212 |
Q |
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| T |
45378257 |
tgaacaacctcttttatgttcaatattcacttactatgtactaattcatttttcagtatgtattattaattgtttgtgtgtaattttttttttgcaggcc |
45378158 |
T |
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| Q |
213 |
ggttgtaacattattgtaccctctgtaagtgtcttcataaactccaactcctaattaaatgtgttatttgattattatga-tatgattaaaattataggt |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45378157 |
ggttgtaacattattgtaccctttgtaagtgtcttcataaactccaactcctaattaaatgtgttatttgattattatgattatgattaaaattataggt |
45378058 |
T |
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| Q |
312 |
atgcatcggtggtagcaatagagagtccatcgaagctggatgatgaaca |
360 |
Q |
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| T |
45378057 |
atgcatcggtggtagcaatagagagtccatcgaagctggatgatgaaca |
45378009 |
T |
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