View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13475_low_9 (Length: 304)

Name: NF13475_low_9
Description: NF13475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13475_low_9
NF13475_low_9
[»] chr2 (5 HSPs)
chr2 (130-293)||(21754712-21754875)
chr2 (130-293)||(21768857-21769020)
chr2 (21-58)||(21754942-21754979)
chr2 (134-232)||(22673402-22673500)
chr2 (21-58)||(21769085-21769122)
[»] chr6 (7 HSPs)
chr6 (130-293)||(27642610-27642763)
chr6 (201-287)||(34269866-34269952)
chr6 (186-287)||(20074413-20074514)
chr6 (134-209)||(33252672-33252747)
chr6 (21-58)||(27642508-27642545)
chr6 (22-58)||(34269691-34269727)
chr6 (199-232)||(22068328-22068361)
[»] scaffold0007 (1 HSPs)
scaffold0007 (186-293)||(62365-62472)
[»] chr8 (1 HSPs)
chr8 (186-293)||(15831017-15831124)
[»] chr7 (8 HSPs)
chr7 (150-287)||(4890206-4890342)
chr7 (201-287)||(792947-793033)
chr7 (201-287)||(808730-808816)
chr7 (201-287)||(3423581-3423668)
chr7 (21-58)||(3423806-3423843)
chr7 (134-232)||(12607095-12607193)
chr7 (249-293)||(16264832-16264875)
chr7 (249-293)||(16272498-16272541)
[»] chr5 (4 HSPs)
chr5 (150-293)||(36432436-36432578)
chr5 (150-300)||(36432789-36432938)
chr5 (199-232)||(37576895-37576928)
chr5 (199-232)||(37586007-37586040)
[»] scaffold0278 (4 HSPs)
scaffold0278 (130-210)||(14893-14973)
scaffold0278 (130-210)||(18227-18307)
scaffold0278 (25-58)||(15038-15071)
scaffold0278 (25-58)||(18372-18405)
[»] chr4 (5 HSPs)
chr4 (201-287)||(3357446-3357533)
chr4 (201-287)||(3367112-3367199)
chr4 (150-232)||(49890917-49890998)
chr4 (21-58)||(3357269-3357306)
chr4 (21-58)||(3366935-3366972)
[»] scaffold0016 (1 HSPs)
scaffold0016 (134-209)||(57617-57691)
[»] scaffold0560 (1 HSPs)
scaffold0560 (150-232)||(9810-9891)
[»] scaffold0014 (2 HSPs)
scaffold0014 (150-232)||(187660-187741)
scaffold0014 (150-210)||(178210-178269)
[»] chr3 (7 HSPs)
chr3 (135-212)||(27873251-27873327)
chr3 (249-293)||(3675871-3675914)
chr3 (249-293)||(3685006-3685049)
chr3 (249-293)||(20434829-20434872)
chr3 (249-293)||(20448755-20448798)
chr3 (249-293)||(30021705-30021748)
chr3 (249-293)||(41431995-41432038)
[»] chr1 (1 HSPs)
chr1 (186-251)||(22477447-22477512)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 130 - 293
Target Start/End: Complemental strand, 21754875 - 21754712
Alignment:
Q  130 gtttgaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggc 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21754875 gtttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggc 21754776  T
Q  230 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21754775 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 130 - 293
Target Start/End: Complemental strand, 21769020 - 21768857
Alignment:
Q  130 gtttgaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggc 229  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21769020 gtttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccagac 21768921  T
Q  230 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21768920 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21768857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21754979 - 21754942
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21754979 ggccggccaccgcgccagccaccggagaagaaggtggc 21754942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 22673500 - 22673402
Alignment:
Q  134 gaaataaaaatgattc-aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccca 232  Q
    ||||||||||||| |  |||||| ||||||||  |||||||||| |||||||  |||||||||||  | ||||||||||||||||| || ||||||||||    
T  22673500 gaaataaaaatgaatataaaaaatcggagctggctatttataaa-gggattgagccggttcaacctttaaaccggtctgaaccggtttaatccaggccca 22673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 21769122 - 21769085
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    |||||||| |||||||||||||||||||||||||||||    
T  21769122 ggccggcccccgcgccagccaccggagaagaaggtggc 21769085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 130 - 293
Target Start/End: Original strand, 27642610 - 27642763
Alignment:
Q  130 gtttgaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggc 229  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||          |||||||||||||||||    
T  27642610 gtttgaaattaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggagcggttcaacccctga----------accggtctattccaggc 27642699  T
Q  230 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27642700 ccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 27642763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 34269866 - 34269952
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 287  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  34269866 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 34269952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 20074514 - 20074413
Alignment:
Q  186 accggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 285  Q
    ||||||||||||   ||||||||||||||||||||| |||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  20074514 accggttcaaccttggaaccggtctgaaccggtctaatccaagcccacacgcgtctggcttcacccaaggcccaaatcctcttcattttatttcctgcac 20074415  T
Q  286 cc 287  Q
    ||    
T  20074414 cc 20074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 33252672 - 33252747
Alignment:
Q  134 gaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 209  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  33252672 gaaataaaaatgaataaaaaaaccggagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 33252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 27642508 - 27642545
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27642508 ggccggccaccgcgccagccaccggagaagaaggtggc 27642545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 34269691 - 34269727
Alignment:
Q  22 gccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  34269691 gccggccaccgcgccagccaccggagaagaaggtggc 34269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 22068361 - 22068328
Alignment:
Q  199 ctgaaccggtctgaaccggtctattccaggccca 232  Q
    ||||||||||||||||||||||| ||||||||||    
T  22068361 ctgaaccggtctgaaccggtctaatccaggccca 22068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 62365 - 62472
Alignment:
Q  186 accggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 285  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  62365 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 62464  T
Q  286 cctccttt 293  Q
    ||||||||    
T  62465 cctccttt 62472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 15831017 - 15831124
Alignment:
Q  186 accggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 285  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15831017 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 15831116  T
Q  286 cctccttt 293  Q
    ||||||||    
T  15831117 cctccttt 15831124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 4890342 - 4890206
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcac 249  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||||||||| |||| ||||||||||| | ||||||||    
T  4890342 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaagcccacacgcgtctggcctcac 4890244  T
Q  250 ccaaggcccaaatcctcttcattttattttctgcaccc 287  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4890243 ccaaggcccaaatcctcttcattttattttctgcaccc 4890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 793033 - 792947
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 287  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  793033 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 792947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 808816 - 808730
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 287  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||    
T  808816 gaaccggtctgaaccggtctattccaagcccacacgcgcctggcctcacccaagacccaaatccttttcgttttattttctgcaccc 808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 3423668 - 3423581
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 287  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||||||||||    
T  3423668 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctnacccaagacccaaatccttttcgttttatttttctgcaccc 3423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 3423843 - 3423806
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3423843 ggccggccaccgcgccagccaccggagaagaaggtggc 3423806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 12607193 - 12607095
Alignment:
Q  134 gaaataaaaatgattc-aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccca 232  Q
    ||||||||||||| |  |||||| ||||||||  |||||||||| |||||||  |||||||||||  | ||||||||||||||||| || ||||||||||    
T  12607193 gaaataaaaatgaatataaaaaatcggagctggctatttataaa-gggattgagccggttcaacctttaaaccggtctgaaccggtttaatccaggccca 12607095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 16264875 - 16264832
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16264875 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16264832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Complemental strand, 16272541 - 16272498
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16272541 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16272498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 150 - 293
Target Start/End: Original strand, 36432436 - 36432578
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcac 249  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | ||||||||    
T  36432436 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagcccacacgcgtctggcctcac 36432534  T
Q  250 ccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  36432535 ccaaggcccaaatcctcttcattttattttctgcaccccccttt 36432578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 300
Target Start/End: Original strand, 36432789 - 36432938
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcac 249  Q
    ||||||||| |||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||| ||||| |||| || |||||||| | ||||||||    
T  36432789 aaaaaaccgaagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagctcacacgcgtctggcctcac 36432887  T
Q  250 ccaaggcccaaatcctcttcattttattttctgcaccctcctttgctactc 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  36432888 ccaaggcccaaatcctcttcattttattttctgcacccccctttactactc 36432938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 37576895 - 37576928
Alignment:
Q  199 ctgaaccggtctgaaccggtctattccaggccca 232  Q
    ||||||||||||||||||||||| ||||||||||    
T  37576895 ctgaaccggtctgaaccggtctaatccaggccca 37576928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 37586007 - 37586040
Alignment:
Q  199 ctgaaccggtctgaaccggtctattccaggccca 232  Q
    ||||||||||||||||||||||| ||||||||||    
T  37586007 ctgaaccggtctgaaccggtctaatccaggccca 37586040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 14973 - 14893
Alignment:
Q  130 gtttgaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 210  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  14973 gtttgaaataaaaatgaataaaaaaaccggagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 14893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 18307 - 18227
Alignment:
Q  130 gtttgaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 210  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  18307 gtttgaaataaaaatgaataaaaaaaccggagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 18227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 15071 - 15038
Alignment:
Q  25 ggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||    
T  15071 ggccaccgcgccagccaccggagaagaaggtggc 15038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 18405 - 18372
Alignment:
Q  25 ggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||    
T  18405 ggccaccgcgccagccaccggagaagaaggtggc 18372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 3357446 - 3357533
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 287  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3357446 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3357533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 3367112 - 3367199
Alignment:
Q  201 gaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 287  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3367112 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 49890917 - 49890998
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccca 232  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||||||||| ||||||||||    
T  49890917 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 49890998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 3357269 - 3357306
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3357269 ggccggccaccgcgccagccaccggagaagaaggtggc 3357306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 3366935 - 3366972
Alignment:
Q  21 ggccggccaccgcgccagccaccggagaagaaggtggc 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3366935 ggccggccaccgcgccagccaccggagaagaaggtggc 3366972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 57691 - 57617
Alignment:
Q  134 gaaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 209  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  57691 gaaataaaaatgaat-aaaaaactggagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 57617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0560 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 9810 - 9891
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccca 232  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||||||||| ||||||||||    
T  9810 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 9891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 187741 - 187660
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccca 232  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||||||||||||| ||||||||||    
T  187741 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 187660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 178269 - 178210
Alignment:
Q  150 aaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 210  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||||||  | |||||||||    
T  178269 aaaaaaccggagctggctatttataaa-gggattgaaccggttcaacctttaaaccggtct 178210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 27873251 - 27873327
Alignment:
Q  135 aaataaaaatgattcaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctga 212  Q
    |||||||||||| | ||||||||||| |||| |||||||||  ||||||| |||||||||||| ||||||||||||||    
T  27873251 aaataaaaatgaat-aaaaaaccggaactgtctatttataacggggattgaaccggttcaacctctgaaccggtctga 27873327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 3675871 - 3675914
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3675871 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3675914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 3685006 - 3685049
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3685006 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3685049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 20434829 - 20434872
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20434829 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 20448755 - 20448798
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20448755 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20448798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 30021705 - 30021748
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  30021705 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 30021748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 41431995 - 41432038
Alignment:
Q  249 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 293  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  41431995 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 41432038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 22477512 - 22477447
Alignment:
Q  186 accggttcaacccctgaaccggtctgaaccggtctattccaggcccacacgcgcccggcctcaccc 251  Q
    ||||||||||||   ||||||||||||||||||| | |||| ||||||||||| | ||| ||||||    
T  22477512 accggttcaaccttggaaccggtctgaaccggtccaatccaagcccacacgcgtctggcttcaccc 22477447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University