View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13476_low_10 (Length: 260)

Name: NF13476_low_10
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13476_low_10
NF13476_low_10
[»] chr6 (1 HSPs)
chr6 (18-247)||(29645828-29646057)
[»] chr8 (18 HSPs)
chr8 (18-134)||(28711839-28711952)
chr8 (18-134)||(28719186-28719299)
chr8 (18-131)||(28700940-28701050)
chr8 (18-131)||(28726831-28726941)
chr8 (18-134)||(28644417-28644530)
chr8 (18-131)||(28625926-28626036)
chr8 (18-131)||(28731531-28731641)
chr8 (202-247)||(28625813-28625858)
chr8 (202-247)||(28636573-28636618)
chr8 (202-247)||(28644307-28644352)
chr8 (202-247)||(28653259-28653304)
chr8 (202-247)||(28700827-28700872)
chr8 (202-247)||(28711729-28711774)
chr8 (202-247)||(28719076-28719121)
chr8 (202-247)||(28726718-28726763)
chr8 (202-247)||(28731418-28731463)
chr8 (202-247)||(28740357-28740402)
chr8 (99-131)||(28740470-28740502)
[»] scaffold0591 (2 HSPs)
scaffold0591 (18-131)||(5248-5358)
scaffold0591 (202-247)||(5426-5471)
[»] chr7 (1 HSPs)
chr7 (100-140)||(49110057-49110097)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 29645828 - 29646057
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  29645828 gcaaaaagccggtaaaggtgctcaactctcggccgacgacatcgtgtcccgtctttccaacattaacaatccaaaagctttcaaaatgttggatcgcatt 29645927  T
Q  118 cttgctcttcttgcctctcactcagtgcttaattgttcaatcattcctcatgaacaaaaccacattaattcctttaagagatactatagcatgactcctg 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29645928 cttgctcttcttgcctctcactcactgcttaattgttcaatcattcctcatgaacaaaaccacattaattcctttaagagatactatagcatgactcctg 29646027  T
Q  218 ttgcgaagttttttgctcctaattctgatg 247  Q
    ||||||||||||||||||||||||||||||    
T  29646028 ttgcgaagttttttgctcctaattctgatg 29646057  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 28711952 - 28711839
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||| ||||||||||||||||| ||||| || || | ||| |||||||||  ||   ||||||  || |||  |||||||||||||||||||    
T  28711952 gcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttcctgca---acaatcttgatgctcccaaaatgttggatcgcatt 28711856  T
Q  118 cttgctcttcttgcctc 134  Q
    |||||| ||||||||||    
T  28711855 cttgctgttcttgcctc 28711839  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 28719299 - 28719186
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||| ||||||||||||||||| ||||| || || | ||| |||||||||  ||   ||||||  || |||  |||||||||||||||||||    
T  28719299 gcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttcctgca---acaatcttgatgctcccaaaatgttggatcgcatt 28719203  T
Q  118 cttgctcttcttgcctc 134  Q
    |||||| ||||||||||    
T  28719202 cttgctgttcttgcctc 28719186  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 28701050 - 28700940
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||   || |||   ||| || |||  |||||||||||||||||||    
T  28701050 gcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaa---tcctgatgctcccaaaatgttggatcgcatt 28700954  T
Q  118 cttgctcttcttgc 131  Q
    ||||||||||||||    
T  28700953 cttgctcttcttgc 28700940  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 28726941 - 28726831
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||| ||||||||||||||||| ||||| || || | ||| ||||||||   |  ||||||||  || |||  |||||||||||||||||||    
T  28726941 gcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtctttc---ctgcaacaatcttgatgctcccaaaatgttggatcgcatt 28726845  T
Q  118 cttgctcttcttgc 131  Q
    |||| |||||||||    
T  28726844 cttgttcttcttgc 28726831  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 28644530 - 28644417
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    ||||||| |||||||||||||||||||||| ||||| || || ||||| ||| ||||   || |||   ||| || |||  |||||||||||||||||||    
T  28644530 gcaaaaaactggtaaaggtgctcaactctctgccgatgagattgtgtcgcgtatttcttgcagcaa---tcctgatgctcccaaaatgttggatcgcatt 28644434  T
Q  118 cttgctcttcttgcctc 134  Q
    |||||| ||||||||||    
T  28644433 cttgctgttcttgcctc 28644417  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 28626036 - 28625926
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||  |||||||||||||||||||    
T  28626036 gcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctcccaaaatgttggatcgcatt 28625940  T
Q  118 cttgctcttcttgc 131  Q
    |||| |||||||||    
T  28625939 cttgttcttcttgc 28625926  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 28731641 - 28731531
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||  |||||||||||||||||||    
T  28731641 gcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctcccaaaatgttggatcgcatt 28731545  T
Q  118 cttgctcttcttgc 131  Q
    |||| |||||||||    
T  28731544 cttgttcttcttgc 28731531  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28625858 - 28625813
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28625858 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28625813  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28636618 - 28636573
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28636618 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28636573  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28644352 - 28644307
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28644352 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28644307  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28653304 - 28653259
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28653304 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28653259  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28700872 - 28700827
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28700872 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28711774 - 28711729
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28711774 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28711729  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28719121 - 28719076
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28719121 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28719076  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28726763 - 28726718
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28726763 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28726718  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28731463 - 28731418
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28731463 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28731418  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28740402 - 28740357
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  28740402 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 28740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 28740502 - 28740470
Alignment:
Q  99 caaaatgttggatcgcattcttgctcttcttgc 131  Q
    |||||||||||||||||||||||||||||||||    
T  28740502 caaaatgttggatcgcattcttgctcttcttgc 28740470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 5248 - 5358
Alignment:
Q  18 gcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcatt 117  Q
    |||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||   || |||   ||| || |||  |||||||||||||||||||    
T  5248 gcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttcttgcagcaa---tcctgatgctcccaaaatgttggatcgcatt 5344  T
Q  118 cttgctcttcttgc 131  Q
    ||||||||||||||    
T  5345 cttgctcttcttgc 5358  T

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Target: scaffold0591; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 5426 - 5471
Alignment:
Q  202 tatagcatgactcctgttgcgaagttttttgctcctaattctgatg 247  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||    
T  5426 tatagtatgactcctgttgctaggttttttgctcctaattctgatg 5471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 49110097 - 49110057
Alignment:
Q  100 aaaatgttggatcgcattcttgctcttcttgcctctcactc 140  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  49110097 aaaatgttagatcgcattcttgctcttcttgcctctcactc 49110057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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