View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13476_low_12 (Length: 250)

Name: NF13476_low_12
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13476_low_12
NF13476_low_12
[»] chr3 (9 HSPs)
chr3 (13-244)||(40709238-40709468)
chr3 (75-250)||(4957631-4957807)
chr3 (24-127)||(50385266-50385372)
chr3 (154-229)||(6130650-6130725)
chr3 (184-235)||(50385182-50385233)
chr3 (180-250)||(43107858-43107928)
chr3 (75-116)||(43106641-43106682)
chr3 (31-75)||(4957770-4957814)
chr3 (156-235)||(16930357-16930436)
[»] chr5 (6 HSPs)
chr5 (20-250)||(28283495-28283724)
chr5 (154-224)||(37508965-37509035)
chr5 (75-133)||(12665336-12665394)
chr5 (80-133)||(1669792-1669845)
chr5 (162-235)||(5862761-5862834)
chr5 (20-75)||(12665318-12665373)
[»] chr2 (12 HSPs)
chr2 (20-250)||(19090141-19090370)
chr2 (20-235)||(30378363-30378575)
chr2 (75-248)||(30618043-30618215)
chr2 (160-250)||(15609720-15609810)
chr2 (75-133)||(30660141-30660199)
chr2 (157-235)||(13293582-13293660)
chr2 (22-75)||(30660125-30660178)
chr2 (154-250)||(17913867-17913963)
chr2 (24-75)||(30618029-30618080)
chr2 (164-246)||(16399693-16399775)
chr2 (154-233)||(16349996-16350076)
chr2 (157-213)||(40355599-40355655)
[»] chr4 (16 HSPs)
chr4 (20-133)||(23426995-23427108)
chr4 (20-235)||(1180139-1180353)
chr4 (75-247)||(51084558-51084730)
chr4 (75-244)||(54234425-54234592)
chr4 (154-235)||(33686643-33686724)
chr4 (74-250)||(33880871-33881043)
chr4 (79-250)||(5382242-5382413)
chr4 (158-250)||(21680541-21680632)
chr4 (154-226)||(39939107-39939179)
chr4 (25-75)||(33881005-33881055)
chr4 (161-213)||(15521732-15521784)
chr4 (85-127)||(40711781-40711823)
chr4 (21-75)||(51084541-51084595)
chr4 (20-73)||(5382382-5382435)
chr4 (157-222)||(20452606-20452671)
chr4 (197-250)||(35452034-35452087)
[»] chr6 (8 HSPs)
chr6 (26-250)||(17314227-17314451)
chr6 (20-133)||(29426952-29427064)
chr6 (177-233)||(14265797-14265853)
chr6 (181-248)||(23103098-23103165)
chr6 (79-133)||(14265704-14265758)
chr6 (166-211)||(15973838-15973883)
chr6 (190-235)||(24610606-24610651)
chr6 (187-235)||(4450695-4450743)
[»] scaffold0004 (2 HSPs)
scaffold0004 (20-116)||(34032-34128)
scaffold0004 (154-249)||(35193-35288)
[»] chr8 (7 HSPs)
chr8 (20-132)||(42280167-42280279)
chr8 (157-235)||(27418709-27418787)
chr8 (165-250)||(13582651-13582736)
chr8 (99-133)||(14266218-14266252)
chr8 (156-213)||(14266141-14266198)
chr8 (189-250)||(42281202-42281263)
chr8 (162-218)||(40084371-40084427)
[»] chr7 (8 HSPs)
chr7 (162-250)||(32521144-32521232)
chr7 (100-235)||(9823499-9823633)
chr7 (100-235)||(10725424-10725558)
chr7 (58-119)||(31932941-31933002)
chr7 (154-235)||(35224746-35224828)
chr7 (175-231)||(15962539-15962596)
chr7 (161-249)||(22807850-22807938)
chr7 (162-235)||(9047356-9047428)
[»] chr1 (11 HSPs)
chr1 (76-235)||(2753080-2753237)
chr1 (96-246)||(13142794-13142943)
chr1 (154-235)||(32018673-32018755)
chr1 (174-235)||(51960329-51960390)
chr1 (175-250)||(31375069-31375144)
chr1 (183-227)||(44836060-44836104)
chr1 (59-133)||(33710561-33710634)
chr1 (74-133)||(42069570-42069629)
chr1 (23-72)||(2753204-2753253)
chr1 (154-241)||(44327344-44327431)
chr1 (162-232)||(25690161-25690231)
[»] scaffold0369 (1 HSPs)
scaffold0369 (164-232)||(10565-10633)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 40709468 - 40709238
Alignment:
Q  13 aaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40709468 aaaatcgtgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgta 40709369  T
Q  113 gtatatataattacaaatatacaggtcggcttgttggcctatagtaggc-ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40709368 gtatatataattacaaatatacaggtcggcttgttggcc--tagtaggctttttttataagtcttagtctgacctatttaaattaatgacctttttaaaa 40709271  T
Q  212 agtttgagcctaacctatttaatacatgagcta 244  Q
    | |||||||||||||||||||||| ||||||||    
T  40709270 aatttgagcctaacctatttaataaatgagcta 40709238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 4957807 - 4957631
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatata--attacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataa 171  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||  |||||| || ||  ||||||| || | ||||||  |||||||||| |||||    
T  4957807 attttgtagaggctcatacgcgtgtattatataatgtagtatatatataattacacatctatgggtcggcctgataggccta--gtaggcttttctataa 4957710  T
Q  172 gtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    | ||||| ||  |||||||||||||| || |||||||||||| || ||||| |||||||||||| | || |||||||||    
T  4957709 gccttagcctagcctatttaaattaacgaactttttaaaaagcttaagccttacctatttaataaacgaactaggccga 4957631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 50385372 - 50385266
Alignment:
Q  24 gagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataat---gtagtatatat 120  Q
    |||||| ||| || |||||||||||||||||||  || || |||| |||||||||| |||||| |||||| |||||||||||||||   |||||||||||    
T  50385372 gagctaacacgtccattttgtagaggctaatacatgtatactataaaatgtattttatagaggttaatacgcgtgtattatataatatagtagtatatat 50385273  T
Q  121 aattaca 127  Q
    |||||||    
T  50385272 aattaca 50385266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 6130725 - 6130650
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctat 229  Q
    |||||| ||||| |||||| |||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||    
T  6130725 tagtagacttttctataagccttagtctaacctatttaaattaatgaactttttaaaaagcttgagcttaacctat 6130650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 50385233 - 50385182
Alignment:
Q  184 cctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    ||||||||||||||||| |||||||||||  ||||| |||||||||||||||    
T  50385233 cctatttaaattaatgagctttttaaaaaacttgagtctaacctatttaata 50385182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 43107858 - 43107928
Alignment:
Q  180 ctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||||||||||||||||||||  ||||||||||| ||||||  ||| ||||||||| | ||| ||||||||    
T  43107858 ctgacctatttaaattaatgaattttttaaaaagcttgagctcaacttatttaataaacgagttaggccga 43107928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 43106641 - 43106682
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtat 116  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  43106641 attttatagaagctaatacacgtgtattatataatgtagtat 43106682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 4957814 - 4957770
Alignment:
Q  31 cacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||    
T  4957814 cacatccattttgtagaggctcatacgcgtgtattatataatgta 4957770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 16930436 - 16930357
Alignment:
Q  156 gtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||||||||| |||||| ||| | | ||||||| ||||||||  | |||||| ||||| ||||||||||||||| |||||    
T  16930436 gtaggcttttctataagcctttgcccgacctatataaattaacaaactttttgaaaagcttgagcctaacctatataata 16930357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 28283495 - 28283724
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    |||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  28283495 tgtagagctaacacatccattttatagaggctaatacacgtgtattataaaatgtattttatagaggctaatacgcgtgcattatataatgtagtatata 28283594  T
Q  120 taattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 218  Q
    |||||||| ||||| |||| || ||  | ||||  |||||||||||| |||||| ||||| ||  ||||||||||| ||||| |||||||||||  ||||    
T  28283595 taattacatatatataggttggtctgataggcc--tagtaggcttttctataagccttagcctagcctatttaaataaatgaactttttaaaaaacttga 28283692  T
Q  219 gcctaacctatttaatacatgagctaggccga 250  Q
    |||| |||||||||||| | ||||||||||||    
T  28283693 gccttacctatttaataaacgagctaggccga 28283724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 37509035 - 37508965
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaa 224  Q
    |||||||||||| ||||| |||||| ||| |||||||||||||| || |||||||||||||||||||||||    
T  37509035 tagtaggcttttctataaatcttagcctggcctatttaaattaacgaactttttaaaaagtttgagcctaa 37508965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 12665336 - 12665394
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  12665336 attttgcataggctaatacacgtgtattatataatgtagttaatataattacacatata 12665394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 1669845 - 1669792
Alignment:
Q  80 gtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  1669845 gtagaagctaataaacgtgtattatataatggagtatatataattacacatata 1669792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 5862834 - 5862761
Alignment:
Q  162 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    ||||||||||| | ||| ||||| ||||||||||||||| |||||||| |||| ||| |||||| |||||||||    
T  5862834 ttttttataagccatagcctgacttatttaaattaatgagctttttaacaagtctgaacctaacatatttaata 5862761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 12665318 - 12665373
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    ||||| |||| |||||| |||||| | |||||||||| ||||||||||||||||||    
T  12665318 tgtagggctaacacatccattttgcataggctaatacacgtgtattatataatgta 12665373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 19090141 - 19090370
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    ||||||||||  ||||| ||||||||||||||||||  ||||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||| |    
T  19090141 tgtagagctaatacatccattttgtagaggctaatatacgtgtattataaaatgtattttatagaggctaatacgagtgtattatataatgtagtataca 19090240  T
Q  120 taattacaaatatacaggtcggcttg-ttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 218  Q
    |||||||| |||||  |||| || || | ||||  |||||||||||| |||| | | ||| ||  ||||||||||||||||| |||||||||||| ||||    
T  19090241 taattacacatatatgggtcagcctgataggcc--tagtaggcttttctatatgccctagcctagcctatttaaattaatgaactttttaaaaagcttga 19090338  T
Q  219 gcctaacctatttaatacatgagctaggccga 250  Q
    |||| |||||||||||| | |||||| |||||    
T  19090339 gccttacctatttaataaacgagctacgccga 19090370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 30378575 - 30378363
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||| |||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  30378575 tgtagagctaacacatccatattgtagaggctaatacgcgtgtattataaaatgtattttatagaggctaatatgcgtatattatataatgtagtatata 30378476  T
Q  120 taattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgag 219  Q
    |||||||| |||||  || || | || | |  | ||||| |||||| |||||| ||||  ||  ||||||||||||||||| |||||| ||||| |||||    
T  30378475 taattacacatatatgggccgacctgatag-gtttagta-gcttttctataagccttatcctagcctatttaaattaatgagcttttt-aaaagcttgag 30378379  T
Q  220 cctaacctatttaata 235  Q
     ||||| |||||||||    
T  30378378 tctaacttatttaata 30378363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 30618043 - 30618215
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtc 174  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||   | || | || | | || ||||||| |||| |||||       
T  30618043 attttgtagaggctaatacgcgtgtattatataatgtaatatatataattacacatatatgcgccgacctgataggct-tagtaggtttttctataaaca 30618141  T
Q  175 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggcc 248  Q
    |||   ||||| |||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  30618142 ttaacatgacccatttaaattaataagctttttaaaaagcttgagcctaacctatttaataaatgagctaggcc 30618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 15609720 - 15609810
Alignment:
Q  160 gcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||||| |||||  ||||| ||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||| |||||  |||||||    
T  15609720 gcttttctataacccttagactgacctatttaaattattgtgctttttaaaaagcttgagcctaacctatttaatagatgagtaaggccga 15609810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 30660141 - 30660199
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  30660141 attttgtagaggctaatacgcgtgtattatataatgtaatatatataattacacatata 30660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 13293660 - 13293582
Alignment:
Q  157 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    ||||||| | |||||| ||||  |||| || ||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  13293660 taggcttgtctataagccttaacctgatctgtttaaattaatgagctttttaaaaagtttgaccctaatctatttaata 13293582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 30660125 - 30660178
Alignment:
Q  22 tagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    |||||||| || ||| ||||||||||||||||||| ||||||||||||||||||    
T  30660125 tagagctaacaaatccattttgtagaggctaatacgcgtgtattatataatgta 30660178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 17913867 - 17913963
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    ||||||| |||| |||||| ||||  ||  ||||||||||||||| | |||||||||||| ||||| || |||||||||||| | ||| ||||||||    
T  17913867 tagtaggtttttctataagccttaacctagcctatttaaattaataaactttttaaaaagcttgagtcttacctatttaataaaggagttaggccga 17913963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 30618029 - 30618080
Alignment:
Q  24 gagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    |||||| || ||| ||||||||||||||||||| ||||||||||||||||||    
T  30618029 gagctaacaaatccattttgtagaggctaatacgcgtgtattatataatgta 30618080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 16399775 - 16399693
Alignment:
Q  164 ttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctagg 246  Q
    |||||||||| ||| |||||| ||||||||||| |   |||| |||||||||| |||||||| ||||||||| ||||| ||||    
T  16399775 ttttataagtattaatctgacatatttaaattagttgactttctaaaaagtttaagcctaacatatttaataaatgagttagg 16399693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 16349996 - 16350076
Alignment:
Q  154 tagtaggcttttt-tataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaa 233  Q
    ||||||||||||| |||||||||||   |||||||||||||||||| || |||| || ||| ||||| ||||| |||||||    
T  16349996 tagtaggctttttgtataagtcttaacttgacctatttaaattaataacattttgaataagcttgagtctaacgtatttaa 16350076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 40355655 - 40355599
Alignment:
Q  157 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 213  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||||||||||||    
T  40355655 taggcttttttataagcctaagtctgacctaattaaattagtaggctttttaaaaag 40355599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 23427108 - 23426995
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  23427108 tgtagagctagcacatccattttgtagaggttaatacgcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataacgtaatatata 23427009  T
Q  120 taattacaaatata 133  Q
    |||||||| |||||    
T  23427008 taattacacatata 23426995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 1180353 - 1180139
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    ||||||| || |||||  |||||||| |||||||||| | ||||||||| |||||||||| |||||| |||||   ||||||||||||||||||||||||    
T  1180353 tgtagagttaacacattcattttgtaaaggctaatacgcctgtattataaaatgtattttatagaggttaatatgagtgtattatataatgtagtatata 1180254  T
Q  120 taattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 218  Q
    || ||||| |||||  |||||| ||  | ||||  |||||| ||||| |||||| ||||||||  ||||||||||||||||| |||||||||||| ||||    
T  1180253 tatttacacatatatgggtcggtctgataggcc--tagtagacttttctataagccttagtctagcctatttaaattaatgaactttttaaaaagcttga 1180156  T
Q  219 gcctaacctatttaata 235  Q
    |  | ||||||||||||    
T  1180155 gtattacctatttaata 1180139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 51084558 - 51084730
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatataa-ttacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataag 172  Q
    ||||||||||||  |||||  ||||||| ||||||||||||||||||| ||| | |||||   | ||||| | | ||||||  |||||||||| ||||||    
T  51084558 attttgtagaggtcaatacgtgtgtattgtataatgtagtatatataaattatacatatatgagccggctagataggccta--gtaggcttttctataag 51084655  T
Q  173 tcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggc 247  Q
     || || ||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||    
T  51084656 cctgagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacgagctaggc 51084730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 54234425 - 54234592
Alignment:
Q  75 attttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataagt 173  Q
    ||||||||||||  ||||   ||||||| |||||||||||||||||||||||| |||||   | || || | | ||||||  |||||||||| ||||||     
T  54234425 attttgtagaggtcaatatgtgtgtattgtataatgtagtatatataattacacatatatgagccgactagataggccta--gtaggcttttctataagc 54234522  T
Q  174 cttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagcta 244  Q
    || |||||| ||||||||| ||||||| |||||||||||| ||||||  ||||||||||| | ||||||||    
T  54234523 ctcagtctggcctatttaa-ttaatgagctttttaaaaagcttgagctaaacctatttaaaaaatgagcta 54234592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 33686724 - 33686643
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||||||||||||||||||| ||||||||||| |||||||||| | |  ||||||||||| ||||| ||||||||| |||||    
T  33686724 tagtaggcttttttataagttttagtctgacccatttaaattattaaattttttaaaaagcttgagtctaacctatataata 33686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 250
Target Start/End: Complemental strand, 33881043 - 33880871
Alignment:
Q  74 tattttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttgtt-ggcctatagtaggcttttttataag 172  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||   |||| ||| |  |  || |||| | ||||||  ||||| |||| || |||    
T  33881043 tattttgtagaggttaatacgcgtgtattatataatgtaatatatat---tacacatacatggaccgacttgataggccta--gtaggtttttctacaag 33880949  T
Q  173 tcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
      |||| || |||||||| || |||||| |||||||||||||||||||||||| ||||||||| | ||| ||||||||    
T  33880948 cgttagcctaacctattttaaataatgagctttttaaaaagtttgagcctaacatatttaataaacgagttaggccga 33880871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 5382413 - 5382242
Alignment:
Q  79 tgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcgg-cttgttggcctatagtaggcttttttataagtctta 177  Q
    |||||||||||||| ||||||||| ||||||| | |||||||||||||| |||||  || ||| || || ||||   ||||||||||| |||||| ||||    
T  5382413 tgtagaggctaataaacgtgtattttataatggaatatatataattacatatata-tggccggtctggtaggcc--cagtaggcttttctataagcctta 5382317  T
Q  178 gtctgacctatttaaattaa--tgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
      ||  ||||||||||||||   ||  ||||||||||| ||||||||||| ||||||| | | ||| ||||||||    
T  5382316 acctagcctatttaaattaacgcgagttttttaaaaagcttgagcctaacttatttaacaaacgagttaggccga 5382242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 21680541 - 21680632
Alignment:
Q  158 aggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||||||| |||||||||||  ||||||||||||||||||| |  ||||| ||||| |||| |||||||||| ||||| | || |||||||||    
T  21680541 aggcttttatataagtcttaacctgacctatttaaattaat-aagttttttaaaagcttgatcctaacctatataataaaagaactaggccga 21680632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 39939107 - 39939179
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacc 226  Q
    |||||||||||  || ||| |||||| ||||||||||||||||||||  ||||||||| |||||| |||||||    
T  39939107 tagtaggctttcctacaagacttagtttgacctatttaaattaatgagttttttaaaatgtttgaacctaacc 39939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 33881055 - 33881005
Alignment:
Q  25 agctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    |||||||| ||| |||||||||||| |||||| ||||||||||||||||||    
T  33881055 agctagcaaatctattttgtagaggttaatacgcgtgtattatataatgta 33881005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 15521732 - 15521784
Alignment:
Q  161 cttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 213  Q
    ||||||||||||||| ||||||||||| ||||||||||   ||||||||||||    
T  15521732 cttttttataagtctaagtctgacctaattaaattaataggctttttaaaaag 15521784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 40711823 - 40711781
Alignment:
Q  85 ggctaatacacgtgtattatataatgtagtatatataattaca 127  Q
    |||||||| || |||||||||||| ||||||||||||||||||    
T  40711823 ggctaatagacatgtattatataacgtagtatatataattaca 40711781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 51084541 - 51084595
Alignment:
Q  21 gtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgta 75  Q
    |||||||||||||||| ||||||||||||  |||||  ||||||| |||||||||    
T  51084541 gtagagctagcacatccattttgtagaggtcaatacgtgtgtattgtataatgta 51084595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 5382435 - 5382382
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatg 73  Q
    |||||| |||||||||| ||| ||||||||||||||  |||||||| |||||||    
T  5382435 tgtagacctagcacatccattgtgtagaggctaataaacgtgtattttataatg 5382382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 20452671 - 20452606
Alignment:
Q  157 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcct 222  Q
    |||||||||||||||| ||||| |||||||||||| || |||   |||| ||||||| ||||||||    
T  20452671 taggcttttttataagccttagcctgacctatttatataaatagactttataaaaagcttgagcct 20452606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 35452087 - 35452034
Alignment:
Q  197 atgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||| |||||||||||||||||| |||| |||||||||| | ||| ||||||||    
T  35452087 atgagctttttaaaaagtttgagtctaatctatttaataaacgagttaggccga 35452034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 17314227 - 17314451
Alignment:
Q  26 gctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatatataatta 125  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||  |||||||||||||||||||||||  ||||    
T  17314227 gctagcacatccattttgtagaggttaatactcgtgtattatataatgtattttgtaaaggttgatacatatgtattatataatgtagtatatactatta 17314326  T
Q  126 caaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatga-cctttttaaaaagtttgagcctaa 224  Q
    || |||||  ||| ||  |  | | || ||||||| |||| ||||||||||||  |||||||||||||| ||| |   ||||||||||| ||||| ||||    
T  17314327 cacatatatgggttggtctaatagact-tagtaggattttctataagtcttagcatgacctatttaaataaataagtttttttaaaaagcttgagtctaa 17314425  T
Q  225 cctatttaatacatgagctaggccga 250  Q
    | ||||||||| | ||||||||||||    
T  17314426 catatttaataaacgagctaggccga 17314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 29427064 - 29426952
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    |||||||||| |||||| |||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29427064 tgtagagctaacacatctattt-gtagaggttaatactcgtgtattataaaatgtattttatagaggctaatacgcgtgtattatataatgtagtatata 29426966  T
Q  120 taattacaaatata 133  Q
    |||||||| |||||    
T  29426965 taattacacatata 29426952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 14265797 - 14265853
Alignment:
Q  177 agtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaa 233  Q
    |||||| ||||||||| ||||||| |||||||||||| ||||| |||||||||||||    
T  14265797 agtctgccctatttaagttaatgagctttttaaaaagcttgagtctaacctatttaa 14265853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 23103098 - 23103165
Alignment:
Q  181 tgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggcc 248  Q
    ||||||||||||||||||    ||||||||||| ||||||||||| |||||| || ||||| ||||||    
T  23103098 tgacctatttaaattaattgattttttaaaaagcttgagcctaacttatttattaaatgagttaggcc 23103165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 14265704 - 14265758
Alignment:
Q  79 tgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    ||||||||||||||| | |||||| | |||||||||||||| ||||| |||||||    
T  14265704 tgtagaggctaatacgcatgtattttgtaatgtagtatataaaattaaaaatata 14265758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 15973838 - 15973883
Alignment:
Q  166 ttataagtcttagtctgacctatttaaattaatgacctttttaaaa 211  Q
    |||||||||||| ||| | |||||||||||||||| ||||||||||    
T  15973838 ttataagtcttaatctaatctatttaaattaatgaactttttaaaa 15973883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 24610606 - 24610651
Alignment:
Q  190 taaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||||||||||  |||||||||||||||||  ||||||||||||||    
T  24610606 taaattaatgaggtttttaaaaagtttgagtgtaacctatttaata 24610651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 4450695 - 4450743
Alignment:
Q  187 atttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    ||||||||||| || ||||||||||||||| ||  ||||||||||||||    
T  4450695 atttaaattaacgaactttttaaaaagttttagtttaacctatttaata 4450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 34032 - 34128
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtat 116  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34032 tgtagagctaacacatccattttgtagaggctaatacgcgtgtattataacatgtattttatagaggctaatacacgtgtattatataatgtagtat 34128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 35193 - 35288
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 249  Q
    |||||||||||| ||||||  |||| ||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  35193 tagtaggcttttctataagcattagcctagcctatttaaattaatgagctttttaaaaagcttgagcctaacctatttaataaacaagctaggccg 35288  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 42280167 - 42280279
Alignment:
Q  20 tgtagagctagcacatcgattttgtagaggctaatactcgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    |||||||||| |||||| |||||||||||| |||||| | ||||||||| |||||||||| |||||  |||||| |||||||||||||||||||||||||    
T  42280167 tgtagagctaacacatccattttgtagaggttaatacgcatgtattataaaatgtattttatagagattaatacgcgtgtattatataatgtagtatata 42280266  T
Q  120 taattacaaatat 132  Q
    |||||||| ||||    
T  42280267 taattacatatat 42280279  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 27418709 - 27418787
Alignment:
Q  157 taggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||| |||| ||||    
T  27418709 taggtttttctataagtcttagtctgacctatttaaattgatgagttttttaagaagtttgagcctaacatattcaata 27418787  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 13582651 - 13582736
Alignment:
Q  165 tttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||||||||||||   ||||||| ||||||||||||  ||||   |||||||||||||||||||| ||||| | ||||| ||||||    
T  13582651 tttataagtcttaacttgacctaattaaattaatgagattttgttaaagtttgagcctaacctatataataaacgagctgggccga 13582736  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 14266252 - 14266218
Alignment:
Q  99 tattatataatgtagtatatataattacaaatata 133  Q
    ||||||||||||||||||||||||||||| |||||    
T  14266252 tattatataatgtagtatatataattacacatata 14266218  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 14266198 - 14266141
Alignment:
Q  156 gtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaag 213  Q
    |||||||||| |||||| ||||| |||||||| | | |||||||| ||||||||||||    
T  14266198 gtaggcttttatataagccttagcctgacctagtaatattaatgagctttttaaaaag 14266141  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 42281202 - 42281263
Alignment:
Q  189 ttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||||||||||| |||||||||||| ||||| || |||||||||| | ||||| || |||||    
T  42281202 ttaaattaatgaactttttaaaaagcttgagtcttacctatttaacaaatgagttaagccga 42281263  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 40084427 - 40084371
Alignment:
Q  162 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttga 218  Q
    |||| |||||||||||   |||||||||||||||||||  |||| ||||||||||||    
T  40084427 ttttctataagtcttaacttgacctatttaaattaatgtgctttataaaaagtttga 40084371  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 32521232 - 32521144
Alignment:
Q  162 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| | ||| ||||||||    
T  32521232 ttttttacaagtcttagtctgacctatctaaattaatgagctttttaaaaagtttgagtcaaacctatttaataaaagagataggccga 32521144  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 9823499 - 9823633
Alignment:
Q  100 attatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatg 199  Q
    ||||||||||||||||||||||| |||| |||||  ||||||| || | |  | ||||||| ||||||||||| ||||  || |||||||||||||||||    
T  9823499 attatataatgtagtatatataaatacacatatatgggtcggcctgatagg-tctagtagggttttttataagccttaccctaacctatttaaattaatg 9823597  T
Q  200 acctttttaaaaagtttgagcctaacctatttaata 235  Q
       ||||||||||| ||||| |||||||||||||||    
T  9823598 tagtttttaaaaagattgagtctaacctatttaata 9823633  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 10725424 - 10725558
Alignment:
Q  100 attatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaattaatg 199  Q
    ||||||||||||||||||||||| |||| |||||  ||||||| || | |  | ||||||| ||||||||||| ||||  || |||||||||||||||||    
T  10725424 attatataatgtagtatatataaatacacatatatgggtcggcctgatagg-tctagtagggttttttataagccttaccctaacctatttaaattaatg 10725522  T
Q  200 acctttttaaaaagtttgagcctaacctatttaata 235  Q
       ||||||||||| ||||| |||||||||||||||    
T  10725523 tagtttttaaaaagattgagtctaacctatttaata 10725558  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 31932941 - 31933002
Alignment:
Q  58 cgtgtattatataatgtattttgtagaggctaatacacgtgtattatataatgtagtatata 119  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  31932941 cgtgttttatataatgtattttgtagaggctaatacgcgtctattatataatatagtatata 31933002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 35224746 - 35224828
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaa-agtttgagcctaacctatttaata 235  Q
    |||||| ||||| |||||| ||||  |||||||||||||||||||||  |||| |||| ||||||||||||||||||||||||    
T  35224746 tagtagacttttgtataagccttaacctgacctatttaaattaatgagtttttaaaaaaagtttgagcctaacctatttaata 35224828  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 15962596 - 15962539
Alignment:
Q  175 ttagtctgacctatttaaattaat-gacctttttaaaaagtttgagcctaacctattt 231  Q
    |||||||||||||||||||||||| ||| |||||| |||||||| |||||||||||||    
T  15962596 ttagtctgacctatttaaattaatggacttttttataaagtttgtgcctaacctattt 15962539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 22807850 - 22807938
Alignment:
Q  161 cttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccg 249  Q
    ||||||| |||| ||||||||||||||||||| | ||||| |||| | ||||| |||||||| |||| |  | || |||||||||||||    
T  22807850 cttttttctaagccttagtctgacctatttaattaaatgagctttattaaaagcttgagcctgacctttacattaaatgagctaggccg 22807938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 9047356 - 9047428
Alignment:
Q  162 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||| |||||| ||||||||  |||||||||||||||| | |||||||||| |||||| ||||  |||||||||    
T  9047356 ttttctataagccttagtctcccctatttaaattaatg-cttttttaaaaaatttgagtctaatatatttaata 9047428  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 2753237 - 2753080
Alignment:
Q  76 ttttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatatacaggtcggcttg-ttggcctatagtaggcttttttataagtc 174  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||||  |||||  |  |||| || | ||||  |||||| ||||| | ||||      
T  2753237 ttttgtagaggttaatacacgtgtattatataatataatatatataattacgcatatatggaccggcatgatcggcc--tagtagacttttctttaagca 2753140  T
Q  175 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||||||||||||||||||||||| | | | |||||||||||||||||| |||||||||||    
T  2753139 ttagtctgacctatttaaattaataaac-tattaaaaagtttgagcctagcctatttaata 2753080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 13142794 - 13142943
Alignment:
Q  96 gtgtattatataatgtagtatatataattacaaatatacaggtcggcttgttggcctatagtaggcttttttataagtcttagtctgacctatttaaatt 195  Q
    ||||||| |||| ||||||||||||||||||| |||||   | ||||| | | |  | |||||||||||| |||||| ||||  ||  ||||||||||||    
T  13142794 gtgtattgtatactgtagtatatataattacacatatatgagccggctagatagg-tctagtaggcttttctataagccttaacctagcctatttaaatt 13142892  T
Q  196 aatgacctttttaaaaagtttgagcctaacctatttaatacatgagctagg 246  Q
    ||||| |||||||||||| ||| ||||||||||||||||| | ||||||||    
T  13142893 aatgagctttttaaaaagcttgtgcctaacctatttaataaacgagctagg 13142943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 32018673 - 32018755
Alignment:
Q  154 tagtaggcttttt-tataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    |||||| |||||| |||||| ||||| ||||||| |||||||| | || |||||||||| |||||||||||||||||||||||    
T  32018673 tagtagcctttttctataagccttagcctgacctgtttaaattgacgagctttttaaaaggtttgagcctaacctatttaata 32018755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 51960329 - 51960390
Alignment:
Q  174 cttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaata 235  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| ||| |||||||||||||||    
T  51960329 cttagtctgtcctatttaaattaatgatcttttttaaaagttagaggctaacctatttaata 51960390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 31375144 - 31375069
Alignment:
Q  175 ttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgagctaggccga 250  Q
    |||| ||| |||||||||| |||||| |||||||||||| |||||| ||||||||||||||   ||||||||||||    
T  31375144 ttagcctggcctatttaaaataatgagctttttaaaaagcttgagcataacctatttaataaccgagctaggccga 31375069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 44836060 - 44836104
Alignment:
Q  183 acctatttaaattaatgacctttttaaaaagtttgagcctaacct 227  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  44836060 acctatttaaattaatgagctttttaaaaagtttaagcctaacct 44836104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 33710634 - 33710561
Alignment:
Q  59 gtgtattatataatgta-ttttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||| | ||||||||||||| |||||    
T  33710634 gtgtattatataatgtatttttgtagaggttaatacgcgtgt-ttatataatgt-gcatatataattacacatata 33710561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 42069629 - 42069570
Alignment:
Q  74 tattttgtagaggctaatacacgtgtattatataatgtagtatatataattacaaatata 133  Q
    ||||||||| ||| ||||||   ||||||||||||||||||||||||||||||| |||||    
T  42069629 tattttgtataggttaatacgtttgtattatataatgtagtatatataattacacatata 42069570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 2753253 - 2753204
Alignment:
Q  23 agagctagcacatcgattttgtagaggctaatactcgtgtattatataat 72  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||||||||    
T  2753253 agagctagcacatcctttttgtagaggttaatacacgtgtattatataat 2753204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 241
Target Start/End: Original strand, 44327344 - 44327431
Alignment:
Q  154 tagtaggcttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctatttaatacatgag 241  Q
    ||||||||||||  |||||| |||  |||||||||||||||||| || |||||||||||  || |  ||||||||||| ||| |||||    
T  44327344 tagtaggcttttcaataagttttaacctgacctatttaaattaaagaactttttaaaaaacttaaatctaacctattttataaatgag 44327431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 25690161 - 25690231
Alignment:
Q  162 ttttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctattta 232  Q
    |||| ||||| ||||| ||| || ||||| ||||||||| | ||||||||||||||| |||||| ||||||    
T  25690161 ttttctataaatcttaatctaacttattttaattaatgaacattttaaaaagtttgaacctaacatattta 25690231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 10565 - 10633
Alignment:
Q  164 ttttataagtcttagtctgacctatttaaattaatgacctttttaaaaagtttgagcctaacctattta 232  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||||    
T  10565 ttttataagtcttagtctgacttatttaaattaatgagctttttaaaaagtatgagcttaacatattta 10633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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