View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_13 (Length: 223)
Name: NF13476_low_13
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 11861583 - 11861778
Alignment:
| Q |
21 |
tgaaaacgtgaaaactttggaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactg |
120 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11861583 |
tgaaaatgtgaacactttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactg |
11861682 |
T |
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| Q |
121 |
gttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
216 |
Q |
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| T |
11861683 |
gttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
11861778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 11829484 - 11829679
Alignment:
| Q |
21 |
tgaaaacgtgaaaactttggaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactg |
120 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
11829484 |
tgaaaacgtgaaaactttgaaagacttgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactg |
11829583 |
T |
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| Q |
121 |
gttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
216 |
Q |
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| T |
11829584 |
gttctttctgaatgcagaaatttagattctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattattatggattgccctttgtta |
11829679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 12040402 - 12040573
Alignment:
| Q |
45 |
cttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagtta |
144 |
Q |
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| T |
12040402 |
cttaaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagtta |
12040501 |
T |
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| Q |
145 |
ggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
216 |
Q |
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| T |
12040502 |
gattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtta |
12040573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 11900935 - 11900740
Alignment:
| Q |
21 |
tgaaaacgtgaaaactttggaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactg |
120 |
Q |
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||||||| |||| ||||| | || |||||| ||||||||||||||||| ||||| || ||||||| ||||||||||| ||||| |||| ||||| |
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| T |
11900935 |
tgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtctaactgacctaacagaaagcataggtaacctcacttcccttggcaaacta |
11900836 |
T |
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| Q |
121 |
gttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
216 |
Q |
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||| |||||||||||||||| |||| || ||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11900835 |
gttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctctaaatactttgattattatggattgccctttgtta |
11900740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 11733276 - 11733468
Alignment:
| Q |
24 |
aaacgtgaaaactttggaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggtt |
123 |
Q |
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|||| ||||| | ||| |||| ||||||||||||||||||| | |||||||| ||||||||||| |||| || || ||||||||| |||||||| |
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| T |
11733276 |
aaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggtt |
11733375 |
T |
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| Q |
124 |
ctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
216 |
Q |
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|||||||||||||||| | | ||||||||||||||||||| |||||| ||| ||| ||| ||||| |||||||| ||||| |||||| |
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| T |
11733376 |
ctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgatcattatggactgccccttgtta |
11733468 |
T |
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