View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_14 (Length: 221)
Name: NF13476_low_14
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 48033233 - 48033417
Alignment:
| Q |
19 |
tttacatgtgtgtgagtttaatttattgaaacggtaacgttcgcaaaaaattgcggcgattcaaagttcaaaccatactcaccatgaatccaaacaactt |
118 |
Q |
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| T |
48033233 |
tttacatgtgtgtgaatttaatttattgaaacggtagcgttcgcaaaa-attgcggcgattcaaagttcaaaccatcctcaccatgaatccaaacaactt |
48033331 |
T |
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| Q |
119 |
ttgatttctcaatgttttatcaggtaattcatcttctccaattccattcccttactatattcttcttccttaacttcactttttca |
204 |
Q |
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| T |
48033332 |
ttgatttgtcaatgttttatcaggtaattcatcttctccaattccattcccttactatattcttcttccttaacttcactttttca |
48033417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 48057697 - 48057734
Alignment:
| Q |
149 |
atcttctccaattccattcccttactatattcttcttc |
186 |
Q |
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| T |
48057697 |
atcttctccaattccattccctcacaatattcttcttc |
48057734 |
T |
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