View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_2 (Length: 604)
Name: NF13476_low_2
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 589
Target Start/End: Original strand, 14166519 - 14167092
Alignment:
| Q |
17 |
tgatcagaaaatgtaaagtt-aaatcattgtagtaacaatattttgtggacatggtaaagcattttataacgagagtgtatcaaaattaaactctagaag |
115 |
Q |
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| T |
14166519 |
tgatcagaaaatgtaaagttcaaatcattgtagtaacaatattttgtggacatggtaaagcattttataacgagagtgtatcaaaattaaactctagaag |
14166618 |
T |
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| Q |
116 |
aacattttatgaatggttccgatttgttttcaatgtacaacttttacctagacaatgtagcaaaattaaattcatcgcagaaaaatgtgagagatctacc |
215 |
Q |
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| T |
14166619 |
aacattttatgaatggttccgatttgttttcaatgtacaacttttacctagacaatgtatcaaaattaaattcatcgcagaaaaatgtgagagatctacc |
14166718 |
T |
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| Q |
216 |
ttttcatagtacttaacatgatcattgaagctacggatggtggtatacaatgccttctgaaattcatcagatccttcatccaacagcttctgtaaagatt |
315 |
Q |
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| T |
14166719 |
ttttcatagtacttaacatgatcattgaagctacggatggtggtatacaatgccttctgaaattcatcagatccttcatccaacagcttctgtaaagatt |
14166818 |
T |
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| Q |
316 |
aaacggacacaaatttaaataacgagttataatatcataannnnnnnaatatcgtaatctttttattatataccttagtgatggaagtaccatgagtctc |
415 |
Q |
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| T |
14166819 |
aaacggacacaaatttaaataacgaatcataatatcataatttttttaatatcgtaatctttttattatataccttagtgatggaagtaccatgagtctc |
14166918 |
T |
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| Q |
416 |
tctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatcctaatggcttcttcatgacttcctttcttctctttcactgactca |
515 |
Q |
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| T |
14166919 |
tctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatccttatggcttcttcatggcttcctttcttctctttcactgactca |
14167018 |
T |
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| Q |
516 |
tgaagaattccagcttcagtttgcgccaattttggattgatctcgtcaccaacatacctaaatgcagtcactag |
589 |
Q |
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| T |
14167019 |
tgaagaattccagcttcagtttgcgccaattttggattgatctcatcaccaacatacctaaatgcagtcactag |
14167092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 414 - 559
Target Start/End: Original strand, 14173880 - 14174025
Alignment:
| Q |
414 |
tctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatcctaatggcttcttcatgacttcctttcttctctttcactgact |
513 |
Q |
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| T |
14173880 |
tctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcatgatttccttttttctctttgattgatt |
14173979 |
T |
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| Q |
514 |
catgaagaattccagcttcagtttgcgccaattttggattgatctc |
559 |
Q |
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| T |
14173980 |
catgaagaatgtcagcttcagtttttgccaatttcggatttatctc |
14174025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 11189277 - 11189310
Alignment:
| Q |
79 |
tttataacgagagtgtatcaaaattaaactctag |
112 |
Q |
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| T |
11189277 |
tttataccgagagtgtatcaaaattaaactctag |
11189310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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