View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_3 (Length: 540)
Name: NF13476_low_3
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 22 - 526
Target Start/End: Original strand, 26472574 - 26473078
Alignment:
| Q |
22 |
caggtgtggctagaacgaagcataaacaaggtcaaccatattcagcttataagttaattagttcactcatattcgagtataaaccagttggttggatgta |
121 |
Q |
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| T |
26472574 |
caggtgtggctagaacgaagcataaacaaggtcaaccatattcagcttataagttaattagttcactcatattcgagtataaaccagtcggttggatgta |
26472673 |
T |
|
| Q |
122 |
tcaagagagagcattgtacaatatgggaagagaaaaaggttttgatttggattttgcaactcaactcgatccttcactttcatttccgtataaatataga |
221 |
Q |
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| T |
26472674 |
tcaagagagagcattgtacaatatgggaagagaaaaaggttttgatttggattttgcaactcaactcgatccttcactttcatttccgtataaatataga |
26472773 |
T |
|
| Q |
222 |
gcattggagaaagtcgaggagaagcaaataaaggaagggattatggagttagataagtttctaggatttaagctttcaccggattgtttagagttgaggg |
321 |
Q |
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| T |
26472774 |
gcattggaaaaagtcgaggagaagcaaataaaggaagggattatggagttagataagtttctaggatttaagctttcacctgattgtttagagttgaggg |
26472873 |
T |
|
| Q |
322 |
cttggttgtatattgcattagatgattatgatagtgctataagagatattagagctttgttaaccatagaggctaattacataactttacatgggaggat |
421 |
Q |
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| T |
26472874 |
catggctgtatattgcattagatgactatgatagtgctataagagatattagagctttgttaaccatagaggctaattacataactttacatgggaggat |
26472973 |
T |
|
| Q |
422 |
taaaggcgaatgcttggttcaaattcttaaaagtaagattcacaagaagaatcaggcggattgttggatgcaattataccaacaatggtcttcagttgat |
521 |
Q |
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| T |
26472974 |
taaaggcgaatgcttggttcaaattcttaaaagtaagattcagaagaagaatcaggcggattgttggatgcaattataccaacaatggtcttcagttgat |
26473073 |
T |
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| Q |
522 |
gatgt |
526 |
Q |
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| T |
26473074 |
gatgt |
26473078 |
T |
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