View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_4 (Length: 369)
Name: NF13476_low_4
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 26473056 - 26473412
Alignment:
| Q |
1 |
caatggtcttcagttgatgatgttggttctttggctattatacatcagatgctagagaatgagcctggaaagagcctgctcgagtttcgtctgtcgctac |
100 |
Q |
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| T |
26473056 |
caatggtcttcagttgatgatgttggttctttggctattatacatcagatgcttgagaatgagcctggaaagagcctgctcgagtttcgtctgtcactac |
26473155 |
T |
|
| Q |
101 |
tcctcttgaggtaagcaactttagaactatctcaaaagtatctctttgtcctaatctttcaattttggcctatgtatgtagcaccggaacttcagattga |
200 |
Q |
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| T |
26473156 |
tcctcttgaggtaagcaactttagaattatctcaaaagtatctctttgtcctaatctttcaattttggcctatgtatgtagcaccggaacttcagattga |
26473255 |
T |
|
| Q |
201 |
atgcgtttttagtgtctgacagcgacacgattctgacacgtagttaactcagacacttttattttcttaaactattacaagtgtctatgtgtgagtatca |
300 |
Q |
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| T |
26473256 |
atgtggttttagtgtctgacatcgacacgattctgacacgtggttaattcagacacttttattttcttaaactattacaagtgtctatgtgtgagtatca |
26473355 |
T |
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| Q |
301 |
tgtctgtcgtctgtctcaattattcgtttattttgactagatgcaaactcacaggtt |
357 |
Q |
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| T |
26473356 |
tgtctggcgtctgtctcaattatttgtatattttgactagatgcaaactcacaggtt |
26473412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 32754643 - 32754600
Alignment:
| Q |
254 |
cacttttattttcttaaactattacaagtgtctatgtgtgagta |
297 |
Q |
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| T |
32754643 |
cactttcattttcttaaactattacaagtgtctacgtgtcagta |
32754600 |
T |
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