View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_5 (Length: 364)
Name: NF13476_low_5
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 40454724 - 40454388
Alignment:
| Q |
18 |
aatacaagtattaagatataacttgtataaagcgacttctattcgggtgaaacagtcggattttaaatctctgtttttaccacatttgtcccatccaaaa |
117 |
Q |
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| T |
40454724 |
aatacaagtattaagatataacttgtataaagcgacttctattcgggtgaaacagtcagattttaaatctctgtttttaccacatttgtcccttccaaaa |
40454625 |
T |
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| Q |
118 |
ctattttaatgtccaaccgtaactcacagcaaagttaaagttatccttcgtaggtttctatatttctttctctgttttcgtcttgtatgtttcttgagct |
217 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40454624 |
ctattttaatgtctaaccgtaactcacaacaaagttaaagttatccttcgtaggtttctatatttctttctctgttttcgtcttttatgtttcttgagct |
40454525 |
T |
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| Q |
218 |
tagcatcaaccttggtgtcttcatcatcactctcattgtcttcattgtgcttcacaacatcgctaaattcattggtgtgttcattttgatcttcaatctg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
40454524 |
tagcatcaaccttggtgtcttcatcatcactctcattgtcttcattgtgcttcacaacatcactaaactcattggtgtgttcattttgatcttcaatctg |
40454425 |
T |
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| Q |
318 |
atcaacctctttaggtttactatggtaacggttcatc |
354 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
40454424 |
atcaacctctttatgtttactatggtaacggttcatc |
40454388 |
T |
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