View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13476_low_6 (Length: 360)
Name: NF13476_low_6
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 38193180 - 38192844
Alignment:
| Q |
17 |
aaaaggagctgaaccgtgaattgatacgacagtaactaacataacaacatgcatgaaatattttctcccatccgttcgtgatttctcctcctttctcttc |
116 |
Q |
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| T |
38193180 |
aaaaagagctgaaccgtgaattgatacgacagtaactaacataacaacatgcatgaaatattttctcccatccgttcgtgatttctcctcctttctcttc |
38193081 |
T |
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| Q |
117 |
agnnnnnnncattcattgcgagaccaaacaaatctcttcttcccttccttctttttcgatcattaattttcattcttcaaaatcaaaattcctgcactat |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38193080 |
agtttttttcattcattgcgagaccaaacaaatctcttcttcccttccttctttttcgatcattaattttcattcttcaaaatcaaaattcctgcactat |
38192981 |
T |
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| Q |
217 |
ccattttttcttctctcttcttgatctttttcatcacgattcaatcccatgacaatgagtaacttcgaaaccaatcccttcgccgaagaagaagttaatc |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38192980 |
ccattttttcttctctcttctttatctttttcatcacgatccaatcccatgacaatgagtaacttcgaaaccaatcccttcgccgaagaagaagttaatc |
38192881 |
T |
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| Q |
317 |
cttttgcagtaagttttttcatatcacattttctctg |
353 |
Q |
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|||| || ||||||||||||||||||||||||||||| |
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| T |
38192880 |
ctttcgcggtaagttttttcatatcacattttctctg |
38192844 |
T |
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