View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13476_low_7 (Length: 346)
Name: NF13476_low_7
Description: NF13476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13476_low_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 26472282 - 26472620
Alignment:
| Q |
8 |
tcaaaggtgagaaattttttatgtagttttgagtcaaaagaaaagttggaaaatttagggtgtgctactttcttgttgtactattttctcagtcaggtgg |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
26472282 |
tcaaaggtgataaattttttatgtagttttgagtcaaaggaaaagttggaaaatttagggtgtgctactttcttgttgtactattttctcagccaggtcg |
26472381 |
T |
|
| Q |
108 |
caatggaagaaagcatggtatcgaaaacaacagcgatgttgttggagagaatgaaagagtgcgctgcagagagatggcagaagggtcttgcattgcatca |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
26472382 |
cgatggaagaaagcatggtatcgaaaacaacagcgatgttgttggagagaatgaaagagtgtgctgcagagaaatggcagaagggtctagcattgcatcg |
26472481 |
T |
|
| Q |
208 |
attagggtgtgtgtatcttgagagaagagagtataaagaagctcaacattgtttcgatgaagcagttgaattaggccatgtttattctatagcaggtgtg |
307 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26472482 |
attagggtgtgtgtttctggaaagaagggagtataaagaagctcaacattgtttcgatgaagcagttgaattaggtcatgtttattctatagcaggtgtg |
26472581 |
T |
|
| Q |
308 |
gctagaacgaagcatcaacaaggtcaaccatattcagct |
346 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26472582 |
gctagaacgaagcataaacaaggtcaaccatattcagct |
26472620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University