View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13477_low_2 (Length: 393)
Name: NF13477_low_2
Description: NF13477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13477_low_2 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 91186 - 91564
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91186 |
tcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
91285 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91286 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
91385 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91386 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
91485 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
91486 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
91564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 4879039 - 4879083
Alignment:
| Q |
294 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
338 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
4879039 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
4879083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 16773159 - 16772781
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773159 |
tcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
16773060 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16773059 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
16772960 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16772959 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
16772860 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
16772859 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgatgaaccagatatgaactcgagggcgagttctg |
16772781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 92 - 379
Target Start/End: Original strand, 32707702 - 32707989
Alignment:
| Q |
92 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707702 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
32707801 |
T |
|
| Q |
192 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707802 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
32707901 |
T |
|
| Q |
292 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32707902 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
32707989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26243194 - 26243511
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||| | | ||||||||| |||| ||||| ||| |||||||| | | |||||||| || ||||| | |
|
|
| T |
26243194 |
tcatcacataaacattagtttagtgcatatgcagacaatatagcaaaagaaatcagtaaacttcataaacaggtttaagagcggataattaaacaaaact |
26243293 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
| |||||||| |||||||| |||| | ||| ||| ||| |||||||||||||||||||||||||| || ||||| | | ||||||||||||| ||||| |
|
|
| T |
26243294 |
ctagatacaagactaatcgagacatgtacaaaaatcaataaatctttaaagttggagatttggtacgggtacatattctcaaagaacgattttgaaaaca |
26243393 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||||| |||||| ||| |||||||| ||||||||||| ||||||||| | || ||||||||||| |
|
|
| T |
26243394 |
accaaatgtcaagttgtcaccaagagcttatggcccctttaaaataattcggaaaatcaatgacaatgcttataaggtagaactttcaagaacctatggt |
26243493 |
T |
|
| Q |
301 |
gtctcagcaaccttcaat |
318 |
Q |
| |
|
|| | | ||||||||||| |
|
|
| T |
26243494 |
gtttgaacaaccttcaat |
26243511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32707640 - 32707701
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32707640 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
32707701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 24904 - 24526
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24904 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaacttcatgaacaggttcgacaacggataatcaagcaaaatt |
24805 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24804 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgctcaaagaacgatttcccaaaca |
24705 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24704 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaatttccaggaacctatggt |
24605 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
24604 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
24526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 2791268 - 2790890
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2791268 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacatgttcgacaacggataatcaagcaaaatt |
2791169 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2791168 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttacgcaaagaacgatttcccaaaca |
2791069 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2791068 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggt |
2790969 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2790968 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
2790890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 14472246 - 14471873
Alignment:
| Q |
5 |
cagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
14472246 |
cagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaatttaag |
14472147 |
T |
|
| Q |
105 |
atacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaacca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
14472146 |
atacaaaactaatcgtgacaagcacagaaagcaacaaatctttaacgttggagatttggtatgggtacattttcgcaaagaacgatttcctaaacaacca |
14472047 |
T |
|
| Q |
205 |
aatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14472046 |
aatgccaagttgtcaccaagagctgatggtcccttcaagatagtacagaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggtgtct |
14471947 |
T |
|
| Q |
305 |
cagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttct |
378 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
14471946 |
cagcaaccttcaatgttgccgaccttacaccatatctggatgatgaactagatataaactcgaggacgagttct |
14471873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 378
Target Start/End: Complemental strand, 4669257 - 4669099
Alignment:
| Q |
220 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
319 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
4669257 |
ccaagagttgatgggcccttcaaaatagtgcagaaaatcattaacaatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
4669158 |
T |
|
| Q |
320 |
ttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttct |
378 |
Q |
| |
|
||| |||| ||||| ||||| |||||| ||||||||| | | ||||||||||||||| |
|
|
| T |
4669157 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttct |
4669099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 49169386 - 49169266
Alignment:
| Q |
222 |
aagagctgatggtcccttcaaaa---tagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaat |
318 |
Q |
| |
|
||||| ||||||||||||||| | |||| || |||||||| || ||| |||||||||| ||| |||||| || |||||||||||||||| |||| |
|
|
| T |
49169386 |
aagagttgatggtcccttcaataatatagtgcataaaatcaatgaaaatccttacaaggttgaactgccagaaatctatggtgtctcagcatgtaacaat |
49169287 |
T |
|
| Q |
319 |
gttgccgatctttcaccatat |
339 |
Q |
| |
|
|||||| ||||||| |||||| |
|
|
| T |
49169286 |
gttgccaatctttcgccatat |
49169266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 2404322 - 2404278
Alignment:
| Q |
294 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
338 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
2404322 |
ctatggagtctctgctaccttcaatgttgctgatctttcaccata |
2404278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 11715989 - 11716367
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11715989 |
tcatcagataaacatcagtttagtgcagatgcagaaagtagagcaaatgagatcaagaaactgcatgaacaggtttgacaacggataatcaagcaaaatt |
11716088 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11716089 |
caagatacaaaactaatcgtgacaagcacataaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgattttccaaaca |
11716188 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11716189 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgctaggaacctatggt |
11716288 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
11716289 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
11716367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 13166404 - 13166784
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
13166404 |
tcattagataaacatcagtttagtgcaaatgcagaaagtagagcaaaagagatcaagaaactgcatgaacaggttcgacaacagacaaataagcaaaatt |
13166503 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13166504 |
catgatacaaaactaatcgtgacaagcacaaaagacaaaaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
13166603 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacc--tatg |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
13166604 |
accaaatggcaagttgtcaccaagagctgatggtcccttcataatagtacaaaaaatcaatgacaatgcttacaaggtagaattttcaagaacctatatg |
13166703 |
T |
|
| Q |
299 |
gtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
13166704 |
gtgtcttagcaaccttcaatgtttccaatctttcaccatatctggatgacgaaccagatataaactcgagggcaagttctg |
13166784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25481429 - 25481376
Alignment:
| Q |
45 |
aaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| |
|
|
| T |
25481429 |
aaaagagatcaagaaactgcatgaacatgttcgaaaactgataattaagcaaaa |
25481376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 3934643 - 3934687
Alignment:
| Q |
294 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
338 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
3934643 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
3934687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 25499889 - 25499845
Alignment:
| Q |
45 |
aaaagagatcaagaaactgcatgaacaggttcgacaacggataat |
89 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
25499889 |
aaaagagataaagaaactgcatgaacatgttcgaaaactgataat |
25499845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 5378721 - 5378344
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5378721 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataattaagcaaaatt |
5378622 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5378621 |
caagatacaaaactaatcgtgacaagcacagaagacaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcctaaaca |
5378522 |
T |
|
| Q |
201 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5378521 |
accaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggt |
5378422 |
T |
|
| Q |
301 |
gtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttct |
378 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
5378421 |
gtctcagcaaccttcaatgttgccgacctttcaccatatctggatgatgaactagatataaactcgaggacgagttct |
5378344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 44 - 379
Target Start/End: Complemental strand, 13719805 - 13719470
Alignment:
| Q |
44 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13719805 |
caaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaat |
13719706 |
T |
|
| Q |
144 |
ctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaa |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13719705 |
ctttaaagttggagatttggtatggatacatttgcgcaaaaaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgacggtcccttcaaa |
13719606 |
T |
|
| Q |
244 |
atagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctgg |
343 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13719605 |
atagttaaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagcaaccttcaatgttgtcgatctttcaccatatctgg |
13719506 |
T |
|
| Q |
344 |
atgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
13719505 |
atgacgaaccagatatgaactcgagggcaagttctg |
13719470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 14026412 - 14026788
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026412 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagggcaaaagagatcaagaaactgcatgaacaggttcgacaacggataatcaagcaaaatt |
14026511 |
T |
|
| Q |
101 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14026512 |
caagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatttcccaaaca |
14026611 |
T |
|
| Q |
201 |
accaaatg-ccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatgg |
299 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14026612 |
accaaatgcccaagttgtccccaagagctgatggtcccctcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctatgg |
14026711 |
T |
|
| Q |
300 |
tgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagtt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
14026712 |
tgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccatatatgaactcgagggcgagtt |
14026788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 338
Target Start/End: Original strand, 45166620 - 45166804
Alignment:
| Q |
154 |
ggagatttggtatggatacatttgcgcaaagaacgatttcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaa |
253 |
Q |
| |
|
||||| ||||||||||| || | ||| || ||||||||||| || |||||||||||||||| || ||||||||||||||||| || | | | || | |
|
|
| T |
45166620 |
ggagacttggtatggatccactagcgaaaggaacgatttcctaacaaaccaaatgccaagttatctccaagagctgatggtccttttagagttacgcaga |
45166719 |
T |
|
| Q |
254 |
aaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
338 |
Q |
| |
|
||||||| || ||||| ||||| |||| | ||||| |||||| ||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
45166720 |
aaatcaatgataatgcctacaaaatagagctaccaggtgactatggagtctctgctaccttcaatgttgctgatctttcaccata |
45166804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 42468904 - 42468860
Alignment:
| Q |
294 |
ctatggtgtctcagcaaccttcaatgttgccgatctttcaccata |
338 |
Q |
| |
|
|||||||||||| || || ||||||||||| |||||||||||||| |
|
|
| T |
42468904 |
ctatggtgtctctgctactttcaatgttgctgatctttcaccata |
42468860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 92 - 379
Target Start/End: Original strand, 12842424 - 12842711
Alignment:
| Q |
92 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842424 |
agcaaaattcaagatacaaaactaatcgtgacaagcacagaaagcaacaaatctttaaagttggagatttggtatggatacatttgcgcaaagaacgatt |
12842523 |
T |
|
| Q |
192 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842524 |
tcccaaacaaccaaatgccaagttgtcaccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccagga |
12842623 |
T |
|
| Q |
292 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaactagatatgaactcgagggtgagttctg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
12842624 |
acctatggtgtctcagcaaccttcaatgttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctg |
12842711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12842362 - 12842423
Alignment:
| Q |
1 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12842362 |
tcatcagataaacatcagtttagtgcagatgcagaaagcagagcaaaagagatcaagaaact |
12842423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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