View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13478_high_7 (Length: 391)
Name: NF13478_high_7
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13478_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 40802395 - 40802081
Alignment:
| Q |
8 |
ggacatcatcaatgggnnnnnnnatcggttagggaccaccacctaatagctaccccaatattgagatgaaaatagtgggaggttgttaagaaggggaagc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802395 |
ggacatcatcaatgggtttttttatcggttagggaccaccacctaatagctaccccgatattgagatgaaaatagtgggaggttgttaagaaggggaagc |
40802296 |
T |
|
| Q |
108 |
tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802295 |
tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg |
40802196 |
T |
|
| Q |
208 |
ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40802195 |
ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac |
40802096 |
T |
|
| Q |
308 |
aaactataggctgag |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40802095 |
aaactataggctgag |
40802081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University