View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13478_low_1 (Length: 597)
Name: NF13478_low_1
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13478_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 158 - 581
Target Start/End: Complemental strand, 46453342 - 46452919
Alignment:
| Q |
158 |
ggaccttgtggcaccaaatctccaacatatcgtcccaagcatcattgagatgaagaaagtgtagaagaagcgaacagcagtgtactgtgggttacgccag |
257 |
Q |
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| T |
46453342 |
ggaccttgtggcaccaaatctccaacatatcgtcccaagcatcattgagatgaagaaagtgtagaagaagcgaacagcagtgtactgtgggttacgccag |
46453243 |
T |
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| Q |
258 |
taagatagattttgcttccaaagacaagttaggaactgctcaaaaggtgaccgacaatacttcgttggaaaatgcaaatctttggagttaccagatggga |
357 |
Q |
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| T |
46453242 |
taagatagattttgcttccaaagacaagttaggaactgctcaaaaggtgaccgacaatacttcgttggaaaatgcaaatctttggagttaccagatggga |
46453143 |
T |
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| Q |
358 |
tgctcaatctttcgaccaactcttggttatatctgaagaaaaagatggtatattaacatatataaaaaattcatgtacaaaagttgcagctaagaactac |
457 |
Q |
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| T |
46453142 |
tgctcaatctttcgaccaactcttggttatatctgaagaaaaagatggtatattaacatatataaaaaattcatgtacaaaagttgcagctaagaactac |
46453043 |
T |
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| Q |
458 |
acatactgatataaactcgatttgcggtagatttctgcaaagtcaactcccagacggttttcttctactgaagaagtaacctccagcatccatgtcgcag |
557 |
Q |
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| T |
46453042 |
acatactgatataaactcgatttgcggtagatttctgcaaagtcaactcccagacggttttcttctactgaagaagtaacctccagcatccatgtcgcag |
46452943 |
T |
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| Q |
558 |
ggttatatccagatttgatctttg |
581 |
Q |
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| T |
46452942 |
ggttatatccagatttgatctttg |
46452919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 46453497 - 46453380
Alignment:
| Q |
1 |
tcatcatatcataactaccgacttgtagcaggaaaacgtagcagagatgtacaaaataataaaaaatggacaacttatgaagcatttgaaacaggttgtt |
100 |
Q |
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| T |
46453497 |
tcatcatatcataactaccgacttgtagcaggaaaacgtagcagagatgtacaaaataataaaaaatggacaacttatgaagcatttgaaacaggttgtt |
46453398 |
T |
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| Q |
101 |
atttgaaattgatattat |
118 |
Q |
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| T |
46453397 |
gtttgaaattgatattat |
46453380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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