View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13478_low_13 (Length: 239)

Name: NF13478_low_13
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13478_low_13
NF13478_low_13
[»] chr8 (16 HSPs)
chr8 (18-239)||(25470334-25470549)
chr8 (18-193)||(25408288-25408466)
chr8 (18-171)||(24889880-24890033)
chr8 (18-171)||(25428840-25428993)
chr8 (18-239)||(25331557-25331773)
chr8 (18-239)||(25826203-25826403)
chr8 (56-171)||(25667918-25668033)
chr8 (66-239)||(25711342-25711518)
chr8 (66-166)||(25501585-25501685)
chr8 (51-175)||(25687653-25687769)
chr8 (22-135)||(25380267-25380378)
chr8 (44-135)||(25486445-25486537)
chr8 (29-121)||(25636110-25636198)
chr8 (154-239)||(25688703-25688785)
chr8 (30-63)||(25501793-25501826)
chr8 (76-135)||(25688791-25688850)
[»] scaffold0070 (2 HSPs)
scaffold0070 (154-239)||(40881-40960)
scaffold0070 (131-171)||(25170-25210)
[»] chr4 (1 HSPs)
chr4 (23-93)||(10332544-10332614)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25470549 - 25470334
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25470549 atctagacttggttgatttgaagcactgcccctaccaacactctcgatataagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 25470450  T
Q  118 acgtcaatattgttaataatagcataggaaactcacttttaaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacac 217  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| ||||||||||| || ||||||||       |||||||    
T  25470449 acgtcaatattgttaataatagcgtgggaaactcatttttaaaccactatatatcatccctatcagtcccttgcatcgtctctcat------ccacacac 25470356  T
Q  218 attaaggaaaaatggtgaatct 239  Q
     |||||||||||||||||||||    
T  25470355 tttaaggaaaaatggtgaatct 25470334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 25408466 - 25408288
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25408466 atctagacttggttgatttgaagcactgcccctaccaacactctcgatatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 25408367  T
Q  118 acgtcaatattgttaataatagcatagg---aaactcacttttaaaccactatatatcatcactaccagtcccttgcct 193  Q
    ||||||||||||||||||||||||||||   ||||||| ||||||| |||||||||||||| ||| |||||||||||||    
T  25408366 acgtcaatattgttaataatagcataggaataaactcatttttaaagcactatatatcatccctatcagtcccttgcct 25408288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 24889880 - 24890033
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  24889880 atctagacttggttgatttgaagcactgcccctaccaacactctcggtatgagaatctatcacatttacacaaaatgacgaaaagtagagagtgaaataa 24889979  T
Q  118 acgtcaatattgttaataatagcataggaaactcacttttaaaccactatatat 171  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  24889980 acgttaatattattaataatagcgtaggaaactcatttttaaaccactatatat 24890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 25428993 - 25428840
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  25428993 atctagacttggttgatttgaagcactgcccctaccaacactctcggtatgagaatctatcacatttacacaaaatgacgaaaagtagagagtgaaataa 25428894  T
Q  118 acgtcaatattgttaataatagcataggaaactcacttttaaaccactatatat 171  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  25428893 acgttaatattattaataatagcgtaggaaactcatttttaaaccactatatat 25428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25331773 - 25331557
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||    
T  25331773 atctagacttggttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcccatttacataaaatgacgaaaattagagagtgaaataa 25331674  T
Q  118 acgtcaatattgttaataatagcataggaaactcacttttaaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacac 217  Q
    |||| |||| |  |||||||||| ||| ||||||| |||||||||||||| |||||||   |||||| | ||||||| |||||||| ||    |||||||    
T  25331673 acgttaatactactaataatagcgtagtaaactcatttttaaaccactatctatcatcctcaccagttctttgcctcgtctctcat-tc----cacacac 25331579  T
Q  218 attaaggaaaaatggtgaatct 239  Q
    | ||||||||||||||||||||    
T  25331578 actaaggaaaaatggtgaatct 25331557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25826403 - 25826203
Alignment:
Q  18 atctagacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataa 117  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  25826403 atctagacttggttgatttgaagcactgccactaccgacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagt------a 25826310  T
Q  118 acgtcaatattgttaataatagcataggaaactcacttttaaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacac 217  Q
    |||||         ||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| | || ||||||||      ||||||||    
T  25826309 acgtc---------aataatagcataggaaactcatttttaaagcactatatatcatccctatcagtcccttacatcgtctctcat------acacacac 25826225  T
Q  218 attaaggaaaaatggtgaatct 239  Q
    | ||||||||||||||||||||    
T  25826224 actaaggaaaaatggtgaatct 25826203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 25668033 - 25667918
Alignment:
Q  56 cactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgtcaatattgttaataatagcataggaaactcactt 155  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||| |||||||| || ||||||||||| ||    
T  25668033 cactctctgcatgagaatctctcacatttacacaaaatgacaaaaaatggagagtgaaataatcgttaatattattaataatcgcttaggaaactcattt 25667934  T
Q  156 ttaaaccactatatat 171  Q
    || |||||||||||||    
T  25667933 tttaaccactatatat 25667918  T

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Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 25711518 - 25711342
Alignment:
Q  66 atgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgtcaatattgtta---------ataatagcataggaaactcacttt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||         || ||||| ||||||||||| |||    
T  25711518 atgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaatgttaatattattattattattgatgatagcgtaggaaactcatttt 25711419  T
Q  157 taaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacacattaaggaaaaatggtgaatct 239  Q
    |||| |||||||||||||| ||| |||||||||||||  ||||||||       |||||| | ||||||||||||||||||||    
T  25711418 taaagcactatatatcatccctatcagtcccttgccttgtctctcat------ccacacatactaaggaaaaatggtgaatct 25711342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 25501685 - 25501585
Alignment:
Q  66 atgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgtcaatattgttaataatagcataggaaactcacttttaaaccact 165  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||  ||||||||||| ||||||||||||    
T  25501685 atgagactctatcacatttacacaaaatgacgaaaaatggagagtgaaataaacgttaatattattaatgatagtgtaggaaactcatttttaaaccact 25501586  T
Q  166 a 166  Q
    |    
T  25501585 a 25501585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 25687769 - 25687653
Alignment:
Q  51 accaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgtcaatattgttaataatagcataggaaact 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||| |  || |||||     |||||||| ||||||| |    
T  25687769 accaacactctctgtatgagaatctctcacatttacacaaaatgacg--aagtggggagtgaaat-attgttaatat-----ataatagcgtaggaaaat 25687678  T
Q  151 cacttttaaaccactatatatcatc 175  Q
    |  ||||||||||||||||||||||    
T  25687677 cgtttttaaaccactatatatcatc 25687653  T

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Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 25380378 - 25380267
Alignment:
Q  22 agacttagttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgt 121  Q
    |||||| ||||||||||| ||| ||||| ||||| | |||  ||||||||||||||||| ||||| ||||||||| |||||||| | |||||||||| ||    
T  25380378 agacttggttgatttgaaccacagcccccaccaataatct--gtatgagaatctctcacctttacgcaaaatgacaaaaagtggggcgtgaaataaatgt 25380281  T
Q  122 caatattgttaata 135  Q
     |||||| ||||||    
T  25380280 taatatttttaata 25380267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 25486537 - 25486445
Alignment:
Q  44 tgcccctaccaacactctcggtatgagaatctctcacatttacacaaaa-tgacgaaaagtggagagtgaaataaacgtcaatattgttaata 135  Q
    |||||| || ||||||||| |||||| ||||||||||| ||||  |||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  25486537 tgcccccacgaacactctctgtatgacaatctctcacaattacgtaaaaatgacgaaaagtggagcgtgaaataaacgttaatatttttaata 25486445  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 25636198 - 25636110
Alignment:
Q  29 gttgatttgaagcactgcccctaccaacactctcggtatgagaatctctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgt 121  Q
    ||||||||||| ||| ||||| ||||| |||||    |||||||||||| || ||||| |||||||||||||||||| | |||||||||||||    
T  25636198 gttgatttgaaccacagcccccaccaatactct----atgagaatctctaacctttacgcaaaatgacgaaaagtggggcgtgaaataaacgt 25636110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 25688785 - 25688703
Alignment:
Q  154 ttttaaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacacattaaggaaaaatggtgaatct 239  Q
    |||||| ||||||||||||||| | | |||| | ||||||| |||||||| |||  ||||||||| ||||||||||||||||||||    
T  25688785 ttttaatccactatatatcatccccatcagttcattgcctcgtctctcat-tcc--acacacacaataaggaaaaatggtgaatct 25688703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 25501826 - 25501793
Alignment:
Q  30 ttgatttgaagcactgcccctaccaacactctcg 63  Q
    ||||||||||||||||||||||||||||||||||    
T  25501826 ttgatttgaagcactgcccctaccaacactctcg 25501793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 25688850 - 25688791
Alignment:
Q  76 ctcacatttacacaaaatgacgaaaagtggagagtgaaataaacgtcaatattgttaata 135  Q
    ||||||||||| ||||||||||| ||||||   ||||||||||||| |||||| ||||||    
T  25688850 ctcacatttacgcaaaatgacgagaagtgggtcgtgaaataaacgttaatatttttaata 25688791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 40881 - 40960
Alignment:
Q  154 ttttaaaccactatatatcatcactaccagtcccttgcctcatctctcatatcctcacacacacattaaggaaaaatggtgaatct 239  Q
    |||||| ||||||||||||||| | | |||||||||||||| ||||||||      ||||||||| |||| |||||||||||||||    
T  40881 ttttaatccactatatatcatccccatcagtcccttgcctcgtctctcat------acacacacactaagaaaaaatggtgaatct 40960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 25170 - 25210
Alignment:
Q  131 taataatagcataggaaactcacttttaaaccactatatat 171  Q
    |||| ||||||||||||||||| ||||||| ||||||||||    
T  25170 taatcatagcataggaaactcatttttaaatcactatatat 25210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 10332614 - 10332544
Alignment:
Q  23 gacttagttgatttgaagcact--gcccctaccaacactctcggtatgagaatctctcacatttacacaaaat 93  Q
    ||||| ||||||||||| |||   ||||| |||||||||||  ||||| ||||||||||||||||||||||||    
T  10332614 gacttggttgatttgaaccacctagcccccaccaacactct--gtatgtgaatctctcacatttacacaaaat 10332544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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