View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13478_low_17 (Length: 225)

Name: NF13478_low_17
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13478_low_17
NF13478_low_17
[»] chr4 (11 HSPs)
chr4 (24-108)||(25654943-25655027)
chr4 (24-108)||(46764913-46764997)
chr4 (24-108)||(11681018-11681102)
chr4 (24-108)||(11689297-11689381)
chr4 (24-108)||(12589506-12589590)
chr4 (162-209)||(12589644-12589691)
chr4 (162-209)||(46764812-46764859)
chr4 (162-209)||(25655081-25655128)
chr4 (26-108)||(52758024-52758107)
chr4 (172-209)||(11680904-11680941)
chr4 (172-209)||(11689183-11689220)
[»] chr6 (5 HSPs)
chr6 (24-108)||(931585-931669)
chr6 (30-108)||(10607628-10607706)
chr6 (162-209)||(931484-931531)
chr6 (162-209)||(10607760-10607807)
chr6 (64-108)||(11769082-11769127)
[»] chr3 (2 HSPs)
chr3 (26-108)||(38741922-38742005)
chr3 (57-107)||(46721712-46721763)
[»] chr1 (1 HSPs)
chr1 (26-108)||(49610920-49611003)
[»] chr8 (1 HSPs)
chr8 (26-76)||(41092577-41092627)
[»] chr7 (2 HSPs)
chr7 (26-76)||(29315083-29315133)
chr7 (26-76)||(41224341-41224391)
[»] chr5 (1 HSPs)
chr5 (63-106)||(40045516-40045560)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 25654943 - 25655027
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25654943 atcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaagattgatatggttttgg 25655027  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 46764997 - 46764913
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46764997 atcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatcaaagattgatatggttttgg 46764913  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 11681102 - 11681018
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11681102 atcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaagattgatatggttttgg 11681018  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 11689381 - 11689297
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11689381 atcatgtttaacacatagatctccctcactctttctacattttgtgataatttgattatttgatctaagattgatatggttttgg 11689297  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 12589506 - 12589590
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12589506 atcatgtttaacacatagatctccatcactctttctacattttgtgataatttgattatttgatcaaagattgatatggttttgg 12589590  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 12589644 - 12589691
Alignment:
Q  162 caccatgttcgattatactactggatttgttcatttgtattccatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589644 caccatgttcgattatactactggatttgttcatttgtattccatgtt 12589691  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 46764859 - 46764812
Alignment:
Q  162 caccatgttcgattatactactggatttgttcatttgtattccatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46764859 caccatgttcgattatactactggatttgttcatttgtattccatgtt 46764812  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 25655081 - 25655128
Alignment:
Q  162 caccatgttcgattatactactggatttgttcatttgtattccatgtt 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25655081 caccatgtttgattatactactggatttgttcatttgtattccatgtt 25655128  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 52758024 - 52758107
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattatttgatta-tttgatcaaagattgatatggttttgg 108  Q
    |||||||||||  || |||||  ||||| | |||| |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  52758024 catgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatatggttttgg 52758107  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 11680941 - 11680904
Alignment:
Q  172 gattatactactggatttgttcatttgtattccatgtt 209  Q
    |||||||||| | |||||||||||||||||||||||||    
T  11680941 gattatactatttgatttgttcatttgtattccatgtt 11680904  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 11689220 - 11689183
Alignment:
Q  172 gattatactactggatttgttcatttgtattccatgtt 209  Q
    |||||||||| | |||||||||||||||||||||||||    
T  11689220 gattatactatttgatttgttcatttgtattccatgtt 11689183  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 931669 - 931585
Alignment:
Q  24 atcatgtttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  931669 atcatgtttaacacatagatctccttcactctttctacattttgtgataatttgattatttgatcaaagattgatatggttttgg 931585  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 10607628 - 10607706
Alignment:
Q  30 tttaacacatagatctccctcactctttctacattttgtgattatttgattatttgatcaaagattgatatggttttgg 108  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  10607628 tttaacacatagatctccctcaccctttctacattttgtgataattatattatttgatcaaagattgatatggttttgg 10607706  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 931531 - 931484
Alignment:
Q  162 caccatgttcgattatactactggatttgttcatttgtattccatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  931531 caccatgttcgattatactactggatttgttcatttgtattccatgtt 931484  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 10607760 - 10607807
Alignment:
Q  162 caccatgttcgattatactactggatttgttcatttgtattccatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10607760 caccatgttcgattatactactggatttgttcatttgtattccatgtt 10607807  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 11769082 - 11769127
Alignment:
Q  64 tttgtgattatttgatta-tttgatcaaagattgatatggttttgg 108  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  11769082 tttgtaattatttgattaatttgatcaaagattgatatggttttgg 11769127  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 38742005 - 38741922
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattatttgatta-tttgatcaaagattgatatggttttgg 108  Q
    |||||||||||  || |||||  ||||| | |||| |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  38742005 catgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatatggttttgg 38741922  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 46721763 - 46721712
Alignment:
Q  57 tctacattttgtgattatttgatta-tttgatcaaagattgatatggttttg 107  Q
    |||| |||||||||| ||||||||| |||||||||| |||||||||||||||    
T  46721763 tctatattttgtgatgatttgattaatttgatcaaaaattgatatggttttg 46721712  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 49610920 - 49611003
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattatttgatta-tttgatcaaagattgatatggttttgg 108  Q
    |||||||||||  || |||||  ||||| | |||| |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  49610920 catgtttaacatctaaatctcgttcactttctctatattttgtgatgatttgattaatttgatcaaaaattgatatggttttgg 49611003  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 41092627 - 41092577
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattattt 76  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41092627 catgtttaacacctagatctccctcactttctctatattttgtgatgattt 41092577  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 29315133 - 29315083
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattattt 76  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  29315133 catgtttaacacctagatctccctcactttctctatattttgtgatgattt 29315083  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 41224341 - 41224391
Alignment:
Q  26 catgtttaacacatagatctccctcactctttctacattttgtgattattt 76  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| ||||    
T  41224341 catgtttaacacctagatctccctcactttctctatattttgtgatgattt 41224391  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 40045560 - 40045516
Alignment:
Q  63 ttttgtgattatttgatta-tttgatcaaagattgatatggtttt 106  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||    
T  40045560 ttttgtaattatttgattaatttgatcaaagattaatatggtttt 40045516  T

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