View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13478_low_2 (Length: 506)
Name: NF13478_low_2
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13478_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 273 - 486
Target Start/End: Original strand, 27589176 - 27589391
Alignment:
| Q |
273 |
ttgtcactaat--agggacaaatattcataatttgcgattttgatatatcataaagtactaaatagcgttgccttgttcaagtgaaaatgatgtgtgtat |
370 |
Q |
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| T |
27589176 |
ttgtcactaatgaagggacaaatattcataatttgcgattttgatatatcataaagtactaaatagcgttgccttgttcaagtgaaaatgatgtgtgtat |
27589275 |
T |
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| Q |
371 |
taaaggacttgtcccactctagaaaggaccacaactgaagtctaagcctgcaaaccattagttttcaatctttgtggtccatatatctgtttcaaaggaa |
470 |
Q |
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| T |
27589276 |
taaaggacttgtcccactctagaaaggaccacagctgaagtctaagcctgcaaaccattagttttcaatctttgtggtccatatatctgtttcaaaggaa |
27589375 |
T |
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| Q |
471 |
gatttacccttatgct |
486 |
Q |
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| T |
27589376 |
gatttacccttatgct |
27589391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 27588898 - 27589069
Alignment:
| Q |
3 |
atcagattaaaaagaaaggaaaaatatttgaaaattgaatgatagctatatattgcatttgtgaatgcagatctcgatgaaaggaaatgtatgggttcct |
102 |
Q |
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| T |
27588898 |
atcagattaaaaagaaaggaaaaatatttgaaaattgaatgatagctatatattgcatttgtgaatgcagatctcgatgaaaggaaatgtatgggttcct |
27588997 |
T |
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| Q |
103 |
tgccgtttcccatcttcttaatgaattggtcactacaaaatttaatttactccattcatttccattactaaa |
174 |
Q |
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| T |
27588998 |
tgccgtttcccatcttcttaatgaattggtcactacaaaatttaatttactccattcatttccattactaaa |
27589069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 27589068 - 27589122
Alignment:
| Q |
221 |
aaaattaatatttaataaatcaacaatttagttaatttctcttttatgtcccttg |
275 |
Q |
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| T |
27589068 |
aaaattaatatttaataaatcaacaatttagttaatttctcttttatgtcccttg |
27589122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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