View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13478_low_3 (Length: 495)

Name: NF13478_low_3
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13478_low_3
NF13478_low_3
[»] chr3 (10 HSPs)
chr3 (205-489)||(50904144-50904428)
chr3 (18-143)||(50903958-50904083)
chr3 (44-143)||(38044520-38044619)
chr3 (44-143)||(48837985-48838084)
chr3 (18-142)||(50152326-50152450)
chr3 (44-142)||(50916154-50916256)
chr3 (234-278)||(48838140-48838184)
chr3 (45-82)||(147941-147978)
chr3 (48-84)||(50823392-50823428)
chr3 (48-84)||(50852433-50852469)
[»] chr7 (9 HSPs)
chr7 (42-143)||(32096737-32096838)
chr7 (44-143)||(32089264-32089363)
chr7 (44-143)||(41706628-41706727)
chr7 (44-143)||(41812159-41812258)
chr7 (46-143)||(39128491-39128588)
chr7 (46-143)||(39478457-39478554)
chr7 (44-143)||(32093021-32093120)
chr7 (44-143)||(32087909-32088008)
chr7 (100-138)||(32089075-32089113)
[»] chr8 (5 HSPs)
chr8 (44-143)||(21634805-21634904)
chr8 (69-143)||(5515537-5515611)
chr8 (49-87)||(10583097-10583135)
chr8 (43-88)||(32735647-32735692)
chr8 (43-87)||(13135367-13135411)
[»] chr6 (5 HSPs)
chr6 (44-143)||(26217233-26217332)
chr6 (46-125)||(7618947-7619026)
chr6 (46-105)||(11187905-11187964)
chr6 (44-126)||(18871931-18872014)
chr6 (43-119)||(6845967-6846043)
[»] chr1 (7 HSPs)
chr1 (44-143)||(31141947-31142046)
chr1 (57-136)||(30272473-30272551)
chr1 (78-143)||(27402434-27402499)
chr1 (57-130)||(27981698-27981771)
chr1 (46-86)||(34470026-34470066)
chr1 (46-83)||(6760094-6760131)
chr1 (47-83)||(520521-520557)
[»] scaffold0856 (1 HSPs)
scaffold0856 (47-136)||(4895-4984)
[»] chr2 (3 HSPs)
chr2 (65-139)||(32271347-32271421)
chr2 (45-143)||(43741443-43741541)
chr2 (46-81)||(20940535-20940570)
[»] chr4 (5 HSPs)
chr4 (89-138)||(8762982-8763031)
chr4 (64-138)||(7777910-7777985)
chr4 (64-138)||(7772302-7772377)
chr4 (64-138)||(7792702-7792777)
chr4 (46-93)||(19260978-19261025)
[»] chr5 (4 HSPs)
chr5 (46-83)||(8058720-8058757)
chr5 (46-81)||(17013884-17013919)
chr5 (50-89)||(18352643-18352682)
chr5 (45-84)||(29176661-29176700)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 205 - 489
Target Start/End: Original strand, 50904144 - 50904428
Alignment:
Q  205 gttgttcgttcaggtatgttcttcttcccttttctgcaaattaatttcgttttccattcggtggttccttttctcttctttgattttcgcgtttagggtt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904144 gttgttcgttcaggtatgttcttcttcccttttctgcaaattaatttcgttttccattcggtggttccttttctcttctttgattttcgcgtttagggtt 50904243  T
Q  305 ttagttaaatattttgaaattgggggttattgtctccttgaacctgtatttccatcaaagtattacaattcttgttctggttattttgttggatggttgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904244 ttagttaaatattttgaaattgggggttattgtctccttgaacctgtatttccatcaaagtattacaattcttgttctggttattttgttggatggttgt 50904343  T
Q  405 tatagatagatatgtattaccattgtattggggatggtcttattgttctgtcggtattgcattatgtatagatagtttcatttca 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904344 tatagatagatatgtattaccattgtattggggatggtcttattgttctgtcggtattgcattatgtatagatagtttcatttca 50904428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 50903958 - 50904083
Alignment:
Q  18 tatattacactacatcacctcttagtttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgac 117  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50903958 tatattacactacatcacctcttagcttgtcacttcggggacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgac 50904057  T
Q  118 acgcacaaatcgagaaatggtccaaa 143  Q
    |||||||| |||||||||||| ||||    
T  50904058 acgcacaattcgagaaatggttcaaa 50904083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 38044619 - 38044520
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044619 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 38044520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 48837985 - 48838084
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48837985 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 48838084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 50152326 - 50152450
Alignment:
Q  18 tatattacactacatcacctcttagtttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgac 117  Q
    |||||||| ||||| |||||| | | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50152326 tatattacgctacaacacctccttgcttgtccctttggggacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgac 50152425  T
Q  118 acgcacaaatcgagaaatggtccaa 142  Q
    |||||||||||||||||||||||||    
T  50152426 acgcacaaatcgagaaatggtccaa 50152450  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 50916256 - 50916154
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagc----atggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 139  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||| ||    ||||||| ||| |||||||||||||||||||| |||||||||||    
T  50916256 ttgtccctttgggaacatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatggtc 50916157  T
Q  140 caa 142  Q
    |||    
T  50916156 caa 50916154  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 48838140 - 48838184
Alignment:
Q  234 ttttctgcaaattaatttcgttttccattcggtggttccttttct 278  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  48838140 ttttctgcaaattaatttcgttttccactcggtggttccttttct 48838184  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 147941 - 147978
Alignment:
Q  45 tgtcccttcggggacatccgataaaattggaacgatac 82  Q
    ||||||||||||||||||||||||||||||||||||||    
T  147941 tgtcccttcggggacatccgataaaattggaacgatac 147978  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 50823392 - 50823428
Alignment:
Q  48 cccttcggggacatccgataaaattggaacgatacag 84  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50823392 cccttcagggacatccgataaaattggaacgatacag 50823428  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 50852469 - 50852433
Alignment:
Q  48 cccttcggggacatccgataaaattggaacgatacag 84  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50852469 cccttcagggacatccgataaaattggaacgatacag 50852433  T

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Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 32096838 - 32096737
Alignment:
Q  42 gtttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096838 gtttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtcca 32096739  T
Q  142 aa 143  Q
    ||    
T  32096738 aa 32096737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 32089363 - 32089264
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32089363 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 32089264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 41706727 - 41706628
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706727 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 41706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 41812159 - 41812258
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41812159 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 41812258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 39128588 - 39128491
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39128588 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39128491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 39478457 - 39478554
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478457 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 39478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 32093120 - 32093021
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32093120 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtccaaa 32093021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 32088008 - 32087909
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32088008 ttgtcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaa 32087909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 32089075 - 32089113
Alignment:
Q  100 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 138  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32089075 cccctgcgcaaggatgacacgcacaaatcgagaaatggt 32089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 21634904 - 21634805
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634904 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 21634805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 5515537 - 5515611
Alignment:
Q  69 aattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatggtccaaa 5515611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 10583135 - 10583097
Alignment:
Q  49 ccttcggggacatccgataaaattggaacgatacagaga 87  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10583135 ccttcggggacatccgataaaattgaaacgatacagaga 10583097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 32735647 - 32735692
Alignment:
Q  43 tttgtcccttcggggacatccgataaaattggaacgatacagagaa 88  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  32735647 tttgtccattcgaggacatcccataaaattggaacgatacagagaa 32735692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 13135367 - 13135411
Alignment:
Q  43 tttgtcccttcggggacatccgataaaattggaacgatacagaga 87  Q
    |||| ||||||| | |||||||||||||||||||||||| |||||    
T  13135367 tttgccccttcgagaacatccgataaaattggaacgatatagaga 13135411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 26217332 - 26217233
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26217332 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 26217233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 7619026 - 7618947
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaa 125  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||| ||||||||||||||    
T  7619026 gtcccttcggggacatccgataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 11187905 - 11187964
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctg 105  Q
    ||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  11187905 gtcccttcgaggacgtccggaaaaattggaacgatacagagaagattagcatggcccctg 11187964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 18872014 - 18871931
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccc-tgcgcaaggatgacacgcacaaa 126  Q
    ||||||| | ||||||||| |||||| ||| || |||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  18872014 ttgtcccattggggacatctgataaagttgaaatgatacagacaagattagcatggccccttgcgcaaagatgacacgcacaaa 18871931  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 6845967 - 6846043
Alignment:
Q  43 tttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacac 119  Q
    ||||| |||| || ||| ||||||||||||||||||||| | ||||||||| || | ||||||||||||||| ||||    
T  6845967 tttgttcctttggagacttccgataaaattggaacgatataaagaagattaacaggacccctgcgcaaggatcacac 6846043  T

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Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 31142046 - 31141947
Alignment:
Q  44 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31142046 ttgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 31141947  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 30272473 - 30272551
Alignment:
Q  57 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 136  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||    
T  30272473 gacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaacaatgacacgcacaaatcgagaaatg 30272551  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 27402499 - 27402434
Alignment:
Q  78 gatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27402499 gatacagaaaaaattagcatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaa 27402434  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 27981698 - 27981771
Alignment:
Q  57 gacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcga 130  Q
    ||||||||||||||||| ||| ||| ||||||||| ||||||  ||||  |||||||||||| |||||||||||    
T  27981698 gacatccgataaaattgaaacaatatagagaagatcagcatgagccctatgcaaggatgacatgcacaaatcga 27981771  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 34470026 - 34470066
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagag 86  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  34470026 gtcccttcggggacatccgataaaattggaatgatacagag 34470066  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 6760094 - 6760131
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgataca 83  Q
    |||||||| |||||||||||||||||||||||||||||    
T  6760094 gtcccttcagggacatccgataaaattggaacgataca 6760131  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 520557 - 520521
Alignment:
Q  47 tcccttcggggacatccgataaaattggaacgataca 83  Q
    ||||||| || ||||||||||||||||||||||||||    
T  520557 tcccttccggaacatccgataaaattggaacgataca 520521  T

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Target: scaffold0856 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 4984 - 4895
Alignment:
Q  47 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 136  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4984 tcccttcggggacattcgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 4895  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 32271421 - 32271347
Alignment:
Q  65 ataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 139  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtc 32271347  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 43741443 - 43741541
Alignment:
Q  45 tgtcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaa 143  Q
    ||||||||| ||||||||||||||||||  ||| ||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  43741443 tgtcccttcagggacatccgataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatgacacgcaccaatcgagaaatggtccaaa 43741541  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 20940535 - 20940570
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgata 81  Q
    |||||||||||||||||||||||||||| |||||||    
T  20940535 gtcccttcggggacatccgataaaattgaaacgata 20940570  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 8762982 - 8763031
Alignment:
Q  89 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8762982 gattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggt 8763031  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 7777985 - 7777910
Alignment:
Q  64 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 138  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| || ||| |||||||||||||||    
T  7777985 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcataaatcgagaaatggt 7777910  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 7772377 - 7772302
Alignment:
Q  64 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 138  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| || ||| | |||| ||||||||    
T  7772377 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcatacatcgtgaaatggt 7772302  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 7792777 - 7792702
Alignment:
Q  64 gataaaattggaacgatacagagaagattagcatggc-ccctgcgcaaggatgacacgcacaaatcgagaaatggt 138  Q
    |||||||||||||||||| |||||||||||||||||| |||  || ||||||| || ||| |||||||||||||||    
T  7792777 gataaaattggaacgatatagagaagattagcatggcacccgacgtaaggatggcaagcataaatcgagaaatggt 7792702  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 19260978 - 19261025
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgatacagagaagatta 93  Q
    ||||||||||||| | ||||| |||||||||||||||||| |||||||    
T  19260978 gtcccttcggggaaacccgattaaattggaacgatacagaaaagatta 19261025  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 8058720 - 8058757
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgataca 83  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8058720 gtcccttcggggacatccgataaaattggagcgataca 8058757  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 17013884 - 17013919
Alignment:
Q  46 gtcccttcggggacatccgataaaattggaacgata 81  Q
    |||||||| |||||||||||||||||||||||||||    
T  17013884 gtcccttcagggacatccgataaaattggaacgata 17013919  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 18352643 - 18352682
Alignment:
Q  50 cttcggggacatccgataaaattggaacgatacagagaag 89  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  18352643 cttcgggaacatccgataaaattggaatgatacagagaag 18352682  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 29176700 - 29176661
Alignment:
Q  45 tgtcccttcggggacatccgataaaattggaacgatacag 84  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  29176700 tgtcccttcgagaacatccgataaaattggaacgatacag 29176661  T

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