View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13478_low_6 (Length: 414)
Name: NF13478_low_6
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13478_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 2608201 - 2607815
Alignment:
| Q |
12 |
aaaggggaagacgatggcaagcaaacaaaccccgacgttaggggaggaagcctgaaactaacttgcaaattaattcatctatttccaaaacatgtaaaaa |
111 |
Q |
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| T |
2608201 |
aaaggggaagacgatggcaagcaaacaaaccccgacgttaggggaggaagcctgaaactaacttgcaaattaattcatctatttccaaaacatgtaaaaa |
2608102 |
T |
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| Q |
112 |
taaggatagaaagaaacaactcaactatatataatccatgattaatgattttatattgacattttaatatcaatggcacactactggatctagatcctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608101 |
taaggatagaaagaaacaactcaactatatataatccatgattaatgattttatattgacattttaatatcaatggcacactactggatctagatcctca |
2608002 |
T |
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| Q |
212 |
aaaaactatataaaaagctaacatttattttaggacaacaaagtaagaaatagataattacatatagaaactgattacacataccctatatatatcttgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608001 |
aaaaactatataaaaagctaacatttattttaggacaacaaagtaagaaatagataattacatatagaaactgattacacataccctatatatatcttgc |
2607902 |
T |
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| Q |
312 |
acacctttttcaattattttccttctctagcaacaataagttccaccatgttattatcaccaataatatcttcaggtaccaatattt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2607901 |
acacctttttcaattattttccttctctagcaacaataagttccaccatgttattatcaccaataatatcttcaggtaccaatattt |
2607815 |
T |
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