View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13478_low_8 (Length: 372)
Name: NF13478_low_8
Description: NF13478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13478_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 26427711 - 26428073
Alignment:
| Q |
1 |
tttttctctaaaacctctgtgatctgatcttccagcttcttttcctgttctgtatgctgcaaaatgcattgttctttttcctctaagacgttccgaagct |
100 |
Q |
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| T |
26427711 |
tttttctctaaaacctctgtgatctgatcttccagcttcttttcctcttctgtatgctgcaaaatgcattgttctttttcctctaagatgttccgaagct |
26427810 |
T |
|
| Q |
101 |
gtaggacttccttgtcaaaagagtctgcattctgctctattttcatcctctccttttgcagagtatcaatttcctctgatttcttcaatatgtctgcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427811 |
gtaggacttccttgtcaaaagagtctgcattctgctctattttcatcctctccttttgcagagtatcaatttcctctgatttcttcaatatgtctgcctg |
26427910 |
T |
|
| Q |
201 |
cattctttccatattttctttgctttcagtctctagagctgaaattttgagcagtagaccttgctgcaaagcattaaatataaaaataacgaacacaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427911 |
cattctttccatattttctttgctttcagtctctagagctgaaattttgagcagtagaccttgctgcaaagcattaaatataaaaataacgaacacaatg |
26428010 |
T |
|
| Q |
301 |
tttgttgatattctgttaaataaagctgattaacgataataccatttggttctctgatgatgt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26428011 |
tttgttgatattctgttaaataaagctgattaacgataataccatttggttctccgatgatgt |
26428073 |
T |
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