View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13479_low_3 (Length: 334)
Name: NF13479_low_3
Description: NF13479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13479_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7582153 - 7582469
Alignment:
| Q |
1 |
accatcttcataagtgcaatcagtttaggtactttctatgatttttaattggaaatgcattgcattttgtttttgtttctttgaaagattattagagata |
100 |
Q |
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| T |
7582153 |
accatcttcataagtgcaatcagtttaggtactttctatgatttttaattggaaatgcattgccttttgtttttgtttctttgaaagattattagagata |
7582252 |
T |
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| Q |
101 |
ttttctcttctatgtatcacaggtggagtaggaatagagaaaatgattgtgaagatggaaaatcatgagtatatggggtttgaaaatctttgtactcaat |
200 |
Q |
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| T |
7582253 |
ttttctcttctatgtatcacaggtggagtaggaatagagaaaatgattgtgaagatggaaaatcatgagtatatggggtttgaaaatctttgtactcaat |
7582352 |
T |
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| Q |
201 |
cttaggtgtgatatggtcgcctattacattttcattcaagcaaaatttgaaagattgtgttaaatattgtattccttaatttattttatactttgcaatg |
300 |
Q |
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| T |
7582353 |
cttaggtgtgatatggtcgcctattacattttcattcaagcaaaatttgaaagattgtgttaaatattgtattccttaatttattttatactttgcaatg |
7582452 |
T |
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| Q |
301 |
gctggatgcaatatatt |
317 |
Q |
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| T |
7582453 |
gctggatgcaatatatt |
7582469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 7571958 - 7572172
Alignment:
| Q |
1 |
accatcttcataagtgcaatcagtttaggtactttctatgatttttaattggaaatgcattgcattttgtttt--------tgtttctttgaaagattat |
92 |
Q |
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| T |
7571958 |
accattttcataagtgcaatcagtttaggtactttctatgatttttaattggaaatgcataacattctgttttattatttttgtttctttgaaatataat |
7572057 |
T |
|
| Q |
93 |
ta---gagatattttctcttc----tatgtatcacaggtggagtaggaatagagaaaatgattgtgaagatggaaaatcatgagtatatggggtttgaaa |
185 |
Q |
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| T |
7572058 |
tatttgaggtattttttctttcttttatgtatcacaggtggagtaggaattcagaacatgattgtgaagttggaaaatcatgagtatatggggtttgaaa |
7572157 |
T |
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| Q |
186 |
atctttgtactcaat |
200 |
Q |
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| T |
7572158 |
atctttgcactcaat |
7572172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 7572234 - 7572317
Alignment:
| Q |
207 |
tgtgatatggtcgcctattacattttcattcaagcaaaatttgaaa-gattgtgttaaatattgtattccttaatttattttat |
289 |
Q |
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| T |
7572234 |
tgtgatatcgtcacctattccattttcattcaagcaaatttggaaaagattgtgttaaatattgtattccttaatttattttat |
7572317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 33123466 - 33123393
Alignment:
| Q |
116 |
atcacaggtggagtaggaatagagaaaatgattgtgaagatggaaaatcatgagtatatggggtttgaaaatct |
189 |
Q |
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| T |
33123466 |
atcacaggtggggtgggaatagggaatatggttgagaagatggaaaatgaagaatatatggggtttgacaatct |
33123393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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