View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13479_low_4 (Length: 325)

Name: NF13479_low_4
Description: NF13479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13479_low_4
NF13479_low_4
[»] chr4 (2 HSPs)
chr4 (76-165)||(24269659-24269748)
chr4 (233-319)||(24269832-24269918)
[»] chr6 (2 HSPs)
chr6 (235-319)||(13604502-13604586)
chr6 (76-165)||(13604690-13604779)
[»] chr3 (2 HSPs)
chr3 (233-290)||(51856018-51856076)
chr3 (76-124)||(53004714-53004762)
[»] chr7 (1 HSPs)
chr7 (233-287)||(8945204-8945259)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 24269659 - 24269748
Alignment:
Q  76 aaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24269659 aaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 24269748  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 24269832 - 24269918
Alignment:
Q  233 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcttctcac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24269832 cctgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcac 24269918  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 13604586 - 13604502
Alignment:
Q  235 tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcacaacgttcttctcac 319  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||||    
T  13604586 tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcaccatgttcttctcac 13604502  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 13604779 - 13604690
Alignment:
Q  76 aaatccccaacagaatcaacaattttctctcttgcatctccccagtataccttccccaccacagtcacctatacacaattcaacttaagt 165  Q
    ||||| |||||| |||||||||| |||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||| ||||||||    
T  13604779 aaatctccaacataatcaacaatcttctctcttgcatcaccccaatataccttagccaccacagtcacctatacacaattcgacttaagt 13604690  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 51856018 - 51856076
Alignment:
Q  233 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtccac 290  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| |||||||    
T  51856018 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtccac 51856076  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 53004762 - 53004714
Alignment:
Q  76 aaatccccaacagaatcaacaattttctctcttgcatctccccagtata 124  Q
    |||||||||||| |||||||||| ||| |||||||||| ||||| ||||    
T  53004762 aaatccccaacataatcaacaatcttccctcttgcatcaccccaatata 53004714  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 8945204 - 8945259
Alignment:
Q  233 cctgtttctgtctagaagcagtatcaagt-atgtccaaaacctcagcatcagggtc 287  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||    
T  8945204 cctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtc 8945259  T

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