View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13479_low_5 (Length: 299)

Name: NF13479_low_5
Description: NF13479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13479_low_5
NF13479_low_5
[»] chr4 (3 HSPs)
chr4 (20-281)||(38014349-38014600)
chr4 (223-281)||(12506436-12506494)
chr4 (223-283)||(29863424-29863484)
[»] chr2 (5 HSPs)
chr2 (20-222)||(31413133-31413335)
chr2 (205-280)||(24454516-24454592)
chr2 (223-281)||(10328955-10329013)
chr2 (223-281)||(23349043-23349101)
chr2 (223-281)||(18355376-18355434)
[»] chr3 (11 HSPs)
chr3 (207-274)||(47763960-47764028)
chr3 (223-281)||(24761961-24762019)
chr3 (223-281)||(24815915-24815973)
chr3 (223-281)||(2549937-2549995)
chr3 (223-281)||(53352824-53352882)
chr3 (223-281)||(31685077-31685135)
chr3 (223-281)||(53027815-53027873)
chr3 (223-284)||(17681764-17681825)
chr3 (223-281)||(37982349-37982407)
chr3 (223-281)||(53973349-53973407)
chr3 (223-281)||(12538698-12538756)
[»] chr8 (10 HSPs)
chr8 (223-281)||(24788096-24788154)
chr8 (223-284)||(27541621-27541682)
chr8 (223-287)||(23738651-23738715)
chr8 (223-281)||(31100935-31100993)
chr8 (223-281)||(5657771-5657829)
chr8 (207-264)||(5662583-5662641)
chr8 (223-281)||(14678084-14678142)
chr8 (227-281)||(24787162-24787218)
chr8 (223-281)||(8158461-8158519)
chr8 (236-281)||(33689370-33689415)
[»] scaffold0157 (1 HSPs)
scaffold0157 (223-281)||(13983-14041)
[»] scaffold0045 (1 HSPs)
scaffold0045 (223-281)||(11697-11755)
[»] scaffold0035 (1 HSPs)
scaffold0035 (223-281)||(35063-35121)
[»] chr7 (4 HSPs)
chr7 (223-281)||(1262088-1262146)
chr7 (223-281)||(26910044-26910102)
chr7 (223-281)||(48849870-48849928)
chr7 (223-281)||(43071445-43071503)
[»] chr5 (7 HSPs)
chr5 (223-282)||(19085440-19085499)
chr5 (223-281)||(22009591-22009649)
chr5 (207-275)||(22004502-22004571)
chr5 (223-281)||(7473552-7473610)
chr5 (223-281)||(9043802-9043860)
chr5 (223-280)||(30442610-30442667)
chr5 (222-281)||(30463112-30463172)
[»] scaffold0096 (1 HSPs)
scaffold0096 (223-281)||(27410-27468)
[»] chr6 (6 HSPs)
chr6 (223-281)||(3065698-3065756)
chr6 (223-274)||(33045494-33045545)
chr6 (227-281)||(10092512-10092566)
chr6 (223-281)||(16246702-16246760)
chr6 (223-280)||(4660238-4660295)
chr6 (227-274)||(30908436-30908483)
[»] scaffold0596 (1 HSPs)
scaffold0596 (223-281)||(654-712)
[»] chr1 (1 HSPs)
chr1 (223-277)||(50990911-50990965)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 38014600 - 38014349
Alignment:
Q  20 ggaatatggaagagaagaaatttgaatttcaaaccaatgtggttgaaccgtgcaagtcaaataacagtaaatgcaatcaacccagcattaacatctagca 119  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38014600 ggaatatggaagag--gaaatttgaatttcaaaccaatgtggttgaaccgtgcaagtcaaataacaataaatgcaatcaacccagcattaacatctagca 38014503  T
Q  120 ttgatgtgtgtaatcaagcgttaaaaagcaatcaatggctcacatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014502 ttgatgtgtgtaatcaagcgttaaaaagcaatcaatggctgatatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaaaa 38014403  T
Q  220 atctaggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||||||||||| |||||||||||||        ||||||||||||||||||||||    
T  38014402 atctaggtttaggttttgtaaagtcattagca--------taggattagatataagtatgat 38014349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 12506494 - 12506436
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  12506494 taggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 12506436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 29863424 - 29863484
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgatga 283  Q
    |||||||| | ||||||||||||| |||||||||||  | |||||||||||||||||||||    
T  29863424 taggtttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatgatga 29863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 31413133 - 31413335
Alignment:
Q  20 ggaatatggaagagaagaaatttgaatttcaaaccaatgtggttgaaccgtgcaagtcaaataacagtaaatgcaatcaacccagcattaacatctagca 119  Q
    |||||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  31413133 ggaatatggaagggga-aaatttgaatttcaaaccaatgtggt-gaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaacatctagca 31413230  T
Q  120 ttgatgtg--tgtaatcaagcgttaaaaagcaatcaatggctcacatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaa 217  Q
    ||||||||  |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  31413231 ttgatgtgtgtgtaatcaagcgttaaaaagcaatcaatggctgatatgttccaggcacccaaatagattgatctaacggccacaatattttggcgcctaa 31413330  T
Q  218 aaatc 222  Q
    |||||    
T  31413331 aaatc 31413335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 24454592 - 24454516
Alignment:
Q  205 gtttggcgcctaaaaa-tctaggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatga 280  Q
    |||||||||||||||| | |||||||||| ||||||| |   ||||||||||||| || ||||||||||||||||||    
T  24454592 gtttggcgcctaaaaaatttaggtttaggatttgcaatggtcttagcaatgttaattaagattagatataagtatga 24454516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 10328955 - 10329013
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  10328955 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 10329013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 23349043 - 23349101
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  23349043 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 23349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 18355376 - 18355434
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | ||||| |||||||||||||    
T  18355376 taggtttagggtttgcaatttcattagcaatgttaacaaagattaaatataagtatgat 18355434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 47763960 - 47764028
Alignment:
Q  207 ttggcgcctaaaaat-ctaggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataa 274  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47763960 ttggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgttaagtaggattagatataa 47764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 24761961 - 24762019
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  24761961 taggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 24762019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 24815973 - 24815915
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  24815973 taggtttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 24815915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 2549995 - 2549937
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  2549995 taggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgat 2549937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 53352824 - 53352882
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  53352824 taggtttagagtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 53352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 31685135 - 31685077
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  31685135 taggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatgat 31685077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 53027815 - 53027873
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||| ||||| ||||||| ||||||| |||||||||||||||||||||    
T  53027815 taggtttagggtttgtaaagttattagcagtgttaagaaggattagatataagtatgat 53027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 17681825 - 17681764
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgatgat 284  Q
    |||||||||| |||||||| |||||| |||||||||  | ||||||||||||||||||||||    
T  17681825 taggtttagggtttgcaaaatcattaacaatgttaacaaagattagatataagtatgatgat 17681764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 37982407 - 37982349
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  37982407 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 37982349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 53973349 - 53973407
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  53973349 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 53973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 12538698 - 12538756
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||| ||||||| || |||||  | |||||||||||||||||||    
T  12538698 taggtttagggtttgcaaaatcattagaaaggttaacaaagattagatataagtatgat 12538756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 24788096 - 24788154
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  24788096 taggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgat 24788154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 27541621 - 27541682
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgatgat 284  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  27541621 taggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgatgat 27541682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 23738715 - 23738651
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgatgatgat 287  Q
    |||| ||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  23738715 tagggttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgatgatgat 23738651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 31100935 - 31100993
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  31100935 taggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 31100993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 5657829 - 5657771
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||||    
T  5657829 taggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatgat 5657771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 5662641 - 5662583
Alignment:
Q  207 ttggcgcctaaaaa-tctaggtttaggttttgcaaagtcattagcaatgttaagtagga 264  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||    
T  5662641 ttggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaatattaattagga 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 14678084 - 14678142
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||| |||||||||||||||||||||  | |||||||||||||||||||    
T  14678084 taggtttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatgat 14678142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 24787162 - 24787218
Alignment:
Q  227 tttaggttttgcaaagtcattagcaatgttaa--gtaggattagatataagtatgat 281  Q
    |||||| |||||||||||||||||||||||||   || |||||||||||||||||||    
T  24787162 tttaggatttgcaaagtcattagcaatgttaattataagattagatataagtatgat 24787218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 8158519 - 8158461
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||||||||||| || ||||||| ||||||  |  ||||||||||||||||||    
T  8158519 taggtttaggttttgcaaggtaattagcattgttaacaaaaattagatataagtatgat 8158461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 33689370 - 33689415
Alignment:
Q  236 tgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||||||||||||||||  | ||||||||||| |||||||    
T  33689370 tgcaaagtcattagcaatgttaacaaagattagatataggtatgat 33689415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 13983 - 14041
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  13983 taggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 14041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 11697 - 11755
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  11697 taggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 11755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 35121 - 35063
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  35121 taggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 35063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 1262146 - 1262088
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  1262146 taggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 1262088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 26910044 - 26910102
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||||| ||||||||||||||  | |||||||||||||||||||    
T  26910044 taggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatgat 26910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 48849870 - 48849928
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||| |||||||||||||||||||||  | |||||||||||||||||||    
T  48849870 taggtttaggatttacaaagtcattagcaatgttaacaaagattagatataagtatgat 48849928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 43071445 - 43071503
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  43071445 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 43071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 19085440 - 19085499
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgatg 282  Q
    |||||||||| |||||||||||||||||||||||||  | ||||| ||||||||||||||    
T  19085440 taggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgatg 19085499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 22009591 - 22009649
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||| ||||||||||||||||  | |||||||||||||||||||    
T  22009591 taggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatgat 22009649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 22004502 - 22004571
Alignment:
Q  207 ttggcgcctaaaa-atctaggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataag 275  Q
    ||||||||||||  ||||||||||||| |||||||| ||||||||||||||||  | |||||||||||||    
T  22004502 ttggcgcctaaactatctaggtttagggtttgcaaaatcattagcaatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 7473552 - 7473610
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  7473552 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 7473610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 9043860 - 9043802
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | |||||||||||||||||||    
T  9043860 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtatgat 9043802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 30442610 - 30442667
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatga 280  Q
    |||||||||| |||||||  ||||||||||||||||  | ||||||||||||| ||||    
T  30442610 taggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 30463112 - 30463172
Alignment:
Q  222 ctaggtttagg-ttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    ||||||||||| |||||||| || ||||||| ||||||  | |||||||||||||||||||    
T  30463112 ctaggtttagggttttgcaaggtaattagcattgttaacaaagattagatataagtatgat 30463172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 27468 - 27410
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||| ||||||||||||||||  | |||||||||||||||||||    
T  27468 taggtttagggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgat 27410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 3065756 - 3065698
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| ||||||||||||||||| |||||||  | |||||||||||||||||||    
T  3065756 taggtttagggtttgcaaagtcattagccatgttaacaaagattagatataagtatgat 3065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 33045494 - 33045545
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataa 274  Q
    |||||||||| |||||||||||||||||||||||||  | ||||||||||||    
T  33045494 taggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataa 33045545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 10092566 - 10092512
Alignment:
Q  227 tttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||| ||||||||||||||| |||||||||  | |||||||||||||||||||    
T  10092566 tttagggtttgcaaagtcattaacaatgttaacaaagattagatataagtatgat 10092512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 16246760 - 16246702
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||| ||||| ||||||||||||||||||||||| |  | |||||||||||||||||||    
T  16246760 taggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgat 16246702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 4660238 - 4660295
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatga 280  Q
    |||| ||||| |||||||||||||||||||||||||  | ||||| ||||||||||||    
T  4660238 tagggttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 30908436 - 30908483
Alignment:
Q  227 tttaggttttgcaaagtcattagcaatgttaagtaggattagatataa 274  Q
    |||||| |||||||||||||||||||||||||  | ||||||||||||    
T  30908436 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataa 30908483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 712 - 654
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagtatgat 281  Q
    |||||||||| |||||||  ||||||||||||||||  | ||| |||||||||||||||    
T  712 taggtttagggtttgcaatttcattagcaatgttaacaaagatcagatataagtatgat 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 50990965 - 50990911
Alignment:
Q  223 taggtttaggttttgcaaagtcattagcaatgttaagtaggattagatataagta 277  Q
    |||||||||| |||||||||| || |||||||||||  | |||||||||||||||    
T  50990965 taggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta 50990911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University