View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13479_low_6 (Length: 221)
Name: NF13479_low_6
Description: NF13479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13479_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 32565469 - 32565657
Alignment:
| Q |
13 |
cgaagaatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565469 |
cgaacaatatcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
32565568 |
T |
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| Q |
113 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttcaggttct |
201 |
Q |
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| T |
32565569 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgttatggtgttttctggttcaggttct |
32565657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 32799700 - 32799888
Alignment:
| Q |
13 |
cgaagaatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799700 |
cgaacaatatcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
32799799 |
T |
|
| Q |
113 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttcaggttct |
201 |
Q |
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| T |
32799800 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgttatggtgttttctggttcaggttct |
32799888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 32815091 - 32815279
Alignment:
| Q |
13 |
cgaagaatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815091 |
cgaacaatatcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
32815190 |
T |
|
| Q |
113 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttcaggttct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32815191 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgttatggtgttttctggttcaggttct |
32815279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 32309359 - 32309178
Alignment:
| Q |
20 |
tatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309359 |
tatcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgc |
32309260 |
T |
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| Q |
120 |
taaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttcaggttct |
201 |
Q |
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| T |
32309259 |
taaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgttatggtgttttctggttcaggttct |
32309178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 32806654 - 32806842
Alignment:
| Q |
13 |
cgaagaatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32806654 |
cgaacaatatcttcagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtat |
32806753 |
T |
|
| Q |
113 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttcaggttct |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
32806754 |
tggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaaattgtttgtgttatggtgttttctggttcagattct |
32806842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 28215713 - 28215838
Alignment:
| Q |
25 |
tcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaa |
124 |
Q |
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||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| | |||||||||| |||||| || | ||||| |
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| T |
28215713 |
tcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaact |
28215809 |
T |
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| Q |
125 |
tgactgaacgaaaagaagtatgagagaaa |
153 |
Q |
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| T |
28215810 |
tcactgaacgaaaagaagtatgatagaaa |
28215838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 28220511 - 28220448
Alignment:
| Q |
25 |
tcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattcttt |
88 |
Q |
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|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28220511 |
tcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattcttt |
28220448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 28220356 - 28220274
Alignment:
| Q |
68 |
tggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaa |
153 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| || | ||||| | ||||||||||||||||||||| ||||| |
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| T |
28220356 |
tggaaccatctctgattctttgattgaaatcaaacggaaaaata---ccagctaacttcactgaacgaaaagaagtatgatagaaa |
28220274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 301507 - 301339
Alignment:
| Q |
18 |
aatatcttcagcttgagggcaagaatccctatagaaattatattcaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggct |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
301507 |
aatatcttcagcttgagggctagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattg--- |
301411 |
T |
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| Q |
118 |
gctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgttttatggtgttttctggttc |
194 |
Q |
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||||| ||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
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| T |
301410 |
gctaacgtgactgaaccaaaag--gtatgagaga---aagaagatgaagttgtttgtgttatggtgttttcgggttc |
301339 |
T |
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