View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1347_low_1 (Length: 601)
Name: NF1347_low_1
Description: NF1347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1347_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 30 - 545
Target Start/End: Complemental strand, 851154 - 850629
Alignment:
| Q |
30 |
caagaatcaaggtttcattttgctaaagttgttaaatcaatttttcagatcctaagcactagcagcagtctgcttactccgcaatgcaagccatcactcc |
129 |
Q |
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| T |
851154 |
caagaatcaaggtttccttttgctaaagttgttaaatcaatttttcagatcctaagcactagcagcagtctgcttactccgcaatgcaagccatcactcc |
851055 |
T |
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| Q |
130 |
attattatcttggggcaataaagacatttcaacagtttgttatatcatgattgaatgagaatgcctattttctgtaagctcataagcaatgcaaacaaca |
229 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
851054 |
attattatcttggggcaatcaagacatttcaacagtttgttatatcatgattgaatgagaatgcctattttctgtaagctcataagcaatgcaaacaaaa |
850955 |
T |
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| Q |
230 |
catctctcatttttatatcgatattatagcaattcttgttatatagtattcgttcacgcggattgcttagcttgtgttagacctctcattaaaaattact |
329 |
Q |
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| T |
850954 |
catctctcatttttatatcgatattatagcaattcttgttatatagtattcgttcacgcggattgcttagcttgtgttagacctctcattagtaattact |
850855 |
T |
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| Q |
330 |
ataggaggaaatgcgacagtgtgtttttatgtgtttgacagatatgtgtgtt----------gaggggattaggctctctaaactgtttattataacgtc |
419 |
Q |
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| T |
850854 |
ataggaggaaatgcgacaatatgtttttatgtgtttgacagatatgtgtgttttatgaataggaggggattaggctctctaaactgtttattataacgtc |
850755 |
T |
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| Q |
420 |
tttaatctttcttaatgtattggtgtgagattgtctttgtaaatgcattgcctccgaagatccggtttgcagaaggataagtccccataattctgttttc |
519 |
Q |
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| T |
850754 |
tttaatctttcttaatgtattgatgtgagtttgtctttgtaaatgcattgcctccgaagatccggtttgcagagggataagtccccataattctgttttc |
850655 |
T |
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| Q |
520 |
ttctagtatattatactcatattaga |
545 |
Q |
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| T |
850654 |
ttctagtacattatactcatattaga |
850629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 844413 - 844326
Alignment:
| Q |
125 |
actccattattatcttggggcaataaagacatttca--acagtttgttatatcatgattgaatgagaatgcctattttctgtaagctcataag |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||| |||||||| ||| ||||| ||||| |
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| T |
844413 |
actccattattatcatggggcaataaagacatttcaacacagtttgtt-----atgattaaatgagaaagcctatttcctggaagctaataag |
844326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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