View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348-INSERTION-1 (Length: 696)

Name: NF1348-INSERTION-1
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348-INSERTION-1
NF1348-INSERTION-1
[»] chr5 (1 HSPs)
chr5 (10-696)||(6203156-6203845)


Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 696
Target Start/End: Complemental strand, 6203845 - 6203156
Alignment:
Q  10 aacgatgaaggcgaagaagaggattggtccaaagccggtttctccctttcctcagacgaagaattcgatggtgaatcggagaaacccaaacggaagaaag 109  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  6203845 aacgatgaaggcgaagaagaggattggtccaaaaccggtttttccctttcctcagacgaagaattcgatggtgaatcggagaaacctcaacggaagaaag 6203746  T
Q  110 agaaagacgcttcacagatcaagcgtcct---gtttcttcttctgcggctaaattatcagctgctgctgctatgatgggcggatcaagagtttcgtcgat 206  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203745 agaaagatgcttcacagatcaagcgtccttctgtttcttcttctgcggctaaattatcagctgctgctgctatgatgggcggatcaagagtttcgtcgat 6203646  T
Q  207 gtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaaggagtttgcgccggatgagaacgataaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203645 gtttacttctgctaattttaagaaaagtagagatgataaggtttgtgagagtattgtagatgatgttcttaaggagtttgcgccggatgagaacgataaa 6203546  T
Q  307 attagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctaaacctaagccctctgctgaatctgtattaggctctt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6203545 attagtcggagaaaggttcaatcaaattcgtcttctgttgttaatgatgcacgtattaaggctatacctaagccctctgctgaatctgtattaggctctt 6203446  T
Q  407 ttgcgagtgaaaatttcacgaaaattggtaatggtggaaatggtgaagttgaatctgttagggttaataaggataaggataatggatctaggttagggtt 506  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6203445 ttgcgagtgaaaatttcacgaaaattggtaatcgtggaaatggtgaagttgaatctgttagggttaataaggatagggataatggatctaggttagggtt 6203346  T
Q  507 agtggaaaagagtgaagtagaagtgaatgagagtttgggaaattgcgagggaggaatggcggtggaagacaatgaatgtggtaacgggcatttagttgaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  6203345 agtggaaaagagtgaagtagaagtgaatgagagtttgggaaattgcgagggaggaatggtggtggaagacaatgaatgtggtaacgaggatttagttgaa 6203246  T
Q  607 gagaaagtggcgtatgtgaaagacgaagaaatggaagtgaaacctgttgtgaaaaaggagggttttactttgaatgcgaaagttagtgaa 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6203245 gagaaagtggcgtatgtgaaagacgaagaaatggaagtgaaacctgttgtgaaaaaggagggttttactttgaatgcgaaagttagtgaa 6203156  T

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