View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348-INSERTION-2 (Length: 615)

Name: NF1348-INSERTION-2
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348-INSERTION-2
NF1348-INSERTION-2
[»] chr5 (19 HSPs)
chr5 (231-608)||(37385263-37385640)
chr5 (7-203)||(37385676-37385872)
chr5 (443-602)||(37232499-37232658)
chr5 (240-353)||(37217691-37217804)
chr5 (240-353)||(37223390-37223503)
chr5 (240-342)||(37232334-37232436)
chr5 (443-605)||(37217858-37218020)
chr5 (443-605)||(37223558-37223720)
chr5 (50-166)||(37217144-37217260)
chr5 (50-168)||(37232075-37232193)
chr5 (50-159)||(37223144-37223253)
chr5 (240-329)||(37198245-37198334)
chr5 (251-347)||(37203257-37203353)
chr5 (463-576)||(37203449-37203562)
chr5 (55-117)||(37197993-37198055)
chr5 (479-548)||(37315683-37315752)
chr5 (251-315)||(37315476-37315540)
chr5 (476-562)||(37239223-37239309)
chr5 (479-576)||(37198482-37198579)
[»] chr3 (2 HSPs)
chr3 (476-554)||(36199539-36199617)
chr3 (251-315)||(36199334-36199398)
[»] chr2 (1 HSPs)
chr2 (254-327)||(8733318-8733391)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 231 - 608
Target Start/End: Complemental strand, 37385640 - 37385263
Alignment:
Q  231 ttgaacatgtataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctaca 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37385640 ttgaacatgtataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaaaatctaca 37385541  T
Q  331 tgattcaggtgacataattataagtacatgatgaagagtatctattttcagtgttgttgcattaatgtgaataaaacgactctagcctaaaaggatcaag 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385540 tgattcaggtgacataattataagtacatgatgaagagtatctattttcagtgttgttgcattaatgtgaataaaacgactctagcctaaaaggatcaag 37385441  T
Q  431 tgaaactatctacagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagt 530  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385440 tgaaactatttacagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagt 37385341  T
Q  531 gcctgtatacatccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgtgaaggtatagtatta 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37385340 gcctgtatacatccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgggaaggtataatatta 37385263  T

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Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 37385872 - 37385676
Alignment:
Q  7 agataataacttccatgtgactattttagacttatatatgttctcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37385872 agataataacctccatgtgactattttagacttatatatgttctcttcaattacacagaaaactgcaataaaaaagatgaagatgcaagcaacaagggaa 37385773  T
Q  107 tttcttgctgaactgaaaatcttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggtggttg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37385772 tttcttgctgaactgaaaatcttaacaagagttcaccactgcaacctggtaaattttcaaacttaaatcatgttttgttttataaagttggttgttg 37385676  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 443 - 602
Target Start/End: Original strand, 37232499 - 37232658
Alignment:
Q  443 cagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacat 542  Q
    |||||| || || |||||| | |||||  |||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||| ||    
T  37232499 cagagaaagaactgatgaccttgtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatat 37232598  T
Q  543 ccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgtgaaggtata 602  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||| | || |||||||||    
T  37232599 ccatcgtgacataaaatcagataatattttattaaataaaaacttcaatgggaaggtata 37232658  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 37217691 - 37217804
Alignment:
Q  240 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctacatgattcagg 339  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  37217691 tataggtacacttgattggatattgtgtcgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcagg 37217790  T
Q  340 tgacataattataa 353  Q
    ||| || |||||||    
T  37217791 tgatattattataa 37217804  T

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Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 37223390 - 37223503
Alignment:
Q  240 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctacatgattcagg 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||||||| ||||||||||||| |||||||    
T  37223390 tataggtacacttgattggatattgtgttgagggatttctattccttgtgtatgaatacatggaaaatggaaacttaaaccaacatctacataattcagg 37223489  T
Q  340 tgacataattataa 353  Q
    ||| || |||||||    
T  37223490 tgatattattataa 37223503  T

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Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 240 - 342
Target Start/End: Original strand, 37232334 - 37232436
Alignment:
Q  240 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctacatgattcagg 339  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  37232334 tataggtacacttgattggatattgtgttgagggatttctatttcttgtgtatgaatacatggaaaatggaaacttaagccaacatctacataattcagg 37232433  T
Q  340 tga 342  Q
    |||    
T  37232434 tga 37232436  T

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Target: chr5; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 443 - 605
Target Start/End: Original strand, 37217858 - 37218020
Alignment:
Q  443 cagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacat 542  Q
    |||||| || ||||||||||| |||||| |||||| ||||||| |||||||| || || || || || || |||||||| ||||| || || ||||| ||    
T  37217858 cagagaaagaaccgatgacgttgtctacaaggatgaaaattgccctggatgttgcgaggggtctagagtatattcatgatcattccgttcccgtatatat 37217957  T
Q  543 ccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgtgaaggtatagta 605  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  37217958 ccatcgcgacataaaatcagataatattttgttaaatgaaaacttcactggcaaggtatagta 37218020  T

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Target: chr5; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 443 - 605
Target Start/End: Original strand, 37223558 - 37223720
Alignment:
Q  443 cagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacat 542  Q
    |||||| || |||||| |||| |||||| |||||| ||||||| |||||||| || ||||||||||| || |||||||| |||||  | |||||||| ||    
T  37223558 cagagaaagaaccgataacgttgtctacaaggatgaaaattgccctggatgttgcgagaggccttgagtatattcatgatcattccattcctgtatatat 37223657  T
Q  543 ccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgtgaaggtatagta 605  Q
    |||||| ||||| ||||||||||||||| | |||||||||||||| ||||  |||| ||||||    
T  37223658 ccatcgtgacataaaatcagataatattctgttaaatgaaaacttcactggcaaggcatagta 37223720  T

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Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 37217144 - 37217260
Alignment:
Q  50 tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 149  Q
    |||| |||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||  ||||||||||| | |||||||| ||||| ||||| |    
T  37217144 tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctctctgaactgaaagttttaacaagtgttcatcactgga 37217243  T
Q  150 acctggtaaattttcaa 166  Q
    |||||||||||||||||    
T  37217244 acctggtaaattttcaa 37217260  T

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Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 37232075 - 37232193
Alignment:
Q  50 tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 149  Q
    |||| |||||||||||||  |||||| || |||||||||| ||| |||||||| ||||||||| ||||||||||| |||||||||| ||||  ||||  |    
T  37232075 tctttaattacacagaaagttgcaatcaagaagatgaagacgcaagcaacaagagaatttctttctgaactgaaagtcttaacaagtgttcgtcacttaa 37232174  T
Q  150 acctggtaaattttcaaac 168  Q
    |||||||||||||||||||    
T  37232175 acctggtaaattttcaaac 37232193  T

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Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 37223144 - 37223253
Alignment:
Q  50 tcttcaattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctgaactgaaaatcttaacaagagttcaccactgca 149  Q
    |||| |||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||| ||||||||||| | |||||||| ||||| ||| | |    
T  37223144 tctttaattacacagaaaattgcaatcaagaagatgaagatgcaagcaacaagagaatttctttctgaactgaaagtgttaacaagtgttcatcaccgga 37223243  T
Q  150 acctggtaaa 159  Q
    ||||||||||    
T  37223244 acctggtaaa 37223253  T

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Target: chr5; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 329
Target Start/End: Original strand, 37198245 - 37198334
Alignment:
Q  240 tataggtacacttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctac 329  Q
    ||||||||| |||||| ||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||| ||||||||||||    
T  37198245 tataggtacgcttgatcggatactgtgttgagggatcccttttccttgtctatgaatacattgataatggaaacttaggccaacatctac 37198334  T

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Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 37203257 - 37203353
Alignment:
Q  251 ttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatctacatgattcaggtgacataa 347  Q
    |||||||||||||||||||| || | ||| |||||||| ||||||||||| |||||||||||||| || ||| |||| || ||||||||||| ||||    
T  37203257 ttgattggatattgtgttgaaggttttctcttccttgtctatgaatacattgacaatggaaacttgagtcaaaatcttcacgattcaggtgagataa 37203353  T

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Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 463 - 576
Target Start/End: Original strand, 37203449 - 37203562
Alignment:
Q  463 tggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcag 562  Q
    |||||||| |||||||||||||| ||||||  ||| ||||| |||||||| |||||||| ||| |||| |||||||| ||||||||||| || || || |    
T  37203449 tggtctacaaggatgcaaattgcgctggattcagccagaggtcttgaatatattcatgaacatacagtacctgtatatatccatcgcgatataaagtcgg 37203548  T
Q  563 ataatattttatta 576  Q
    | || |||||||||    
T  37203549 agaacattttatta 37203562  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 37197993 - 37198055
Alignment:
Q  55 aattacacagaaaactgcaataaaaaagatgaagatgcaggcaacaagggaatttcttgctga 117  Q
    ||||||||||||| ||||||||||||||||| | ||| | |||||||  ||||||||||||||    
T  37197993 aattacacagaaagctgcaataaaaaagatggacatgaaagcaacaaaagaatttcttgctga 37198055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 548
Target Start/End: Original strand, 37315683 - 37315752
Alignment:
Q  479 aaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcg 548  Q
    |||||||||| |||  ||||||||||||||||||||||||||| ||| | |||||| | || ||||||||    
T  37315683 aaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatgtatatccatcg 37315752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 37315476 - 37315540
Alignment:
Q  251 ttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaactt 315  Q
    |||||||||||||| ||||| ||||| || |||||||| |||||| |||| || |||||||||||    
T  37315476 ttgattggatattgcgttgaaggatcacttttccttgtatatgaacacattgataatggaaactt 37315540  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 562
Target Start/End: Original strand, 37239223 - 37239309
Alignment:
Q  476 tgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcag 562  Q
    |||| |||||||| |||  ||| |||||||| |||||||||||||| ||  | |||||||| || |||||||||||| | |||||||    
T  37239223 tgcagattgctctagattcagccagaggcctagaatacattcatgaacacactgtgcctgtttatatccatcgcgacgtaaaatcag 37239309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 576
Target Start/End: Original strand, 37198482 - 37198579
Alignment:
Q  479 aaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacatcaaatcagataatattttatta 576  Q
    ||||||||||||||  ||| ||||| |||||||||||||| || ||| | || |||  ||| || ||||||||||| || ||||| |||||| |||||    
T  37198482 aaattgctctggattcagccagaggtcttgaatacattcacgaacataccgtccctacatatattcatcgcgacataaagtcagaaaatattctatta 37198579  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 554
Target Start/End: Original strand, 36199539 - 36199617
Alignment:
Q  476 tgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacatccatcgcgacat 554  Q
    ||||||||||| |||||   || ||||| |||||||| || ||||||||| ||||||||||||| || ||||| |||||    
T  36199539 tgcaaattgctttggattctgccagaggtcttgaatatatccatgagcatacagtgcctgtatatattcatcgtgacat 36199617  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 36199334 - 36199398
Alignment:
Q  251 ttgattggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaactt 315  Q
    |||||||||||| || |||| || ||||| |||||||| ||||||||||| || || ||||||||    
T  36199334 ttgattggatatagtattgaaggctctcttttccttgtctatgaatacattgagaacggaaactt 36199398  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 8733391 - 8733318
Alignment:
Q  254 attggatattgtgttgagggatctctattccttgtttatgaatacatcgacaatggaaacttaagccaacatct 327  Q
    |||||||||||||||||||| ||| ||||  | |||||||| ||||| || ||||| || ||||| ||||||||    
T  8733391 attggatattgtgttgagggctctttatttttggtttatgagtacattgagaatggcaatttaagtcaacatct 8733318  T

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