View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13480_high_11 (Length: 226)
Name: NF13480_high_11
Description: NF13480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13480_high_11 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12571 - 12352
Alignment:
| Q |
1 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12571 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaa |
12472 |
T |
|
| Q |
101 |
aatcattatgaaatatcaaatatgaagtcagatagttataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12471 |
aatcattatgaaatatcaaatatgaagtcagatagttat-atacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaa |
12373 |
T |
|
| Q |
201 |
tgcagacaagcgttttaaact |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
12372 |
tgcagacaagcattttaaact |
12352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2170690 - 2170909
Alignment:
| Q |
1 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170690 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaa |
2170789 |
T |
|
| Q |
101 |
aatcattatgaaatatcaaatatgaagtcagatagttataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2170790 |
aatcattatgaaatatcaaatatgaagtcagatagttat-atacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaa |
2170888 |
T |
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| Q |
201 |
tgcagacaagcgttttaaact |
221 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
2170889 |
tgcagacaagcattttaaact |
2170909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2187936 - 2187709
Alignment:
| Q |
1 |
ccactctggaatcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||| || |
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| T |
2187936 |
ccactctggaaccctagcacttcctgccaaactaaactcggtgcctccatcttcatgcaaatgctgttatttgtaaagaactaacaagtttagcaagaaa |
2187837 |
T |
|
| Q |
101 |
aatcattatgaaatatcaaatatgaagtcagatagttat-------aatacaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgc |
193 |
Q |
| |
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|||||||||||||||| ||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
2187836 |
aatcattatgaaatattaaaaatgaagtcaaatagatataaaacaaaatacaaaacctgactaagtagcatgcttctacatgaggaagtcagtgaattgc |
2187737 |
T |
|
| Q |
194 |
agtgtaatgcagacaagcgttttaaact |
221 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
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| T |
2187736 |
attgtaatgcagacaaacgttttaaact |
2187709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 28151992 - 28151916
Alignment:
| Q |
143 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaatgcagacaagcgttttaaa |
219 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| | ||||| || || | ||||||||||||| ||||||| |
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| T |
28151992 |
acaaaacctgattcagtagcatgtttctacatgaggaacttgatgatttacaattcaatgcagacaagcattttaaa |
28151916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 28191337 - 28191265
Alignment:
| Q |
138 |
ataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaatgcagacaag |
210 |
Q |
| |
|
|||| ||||||||||| | | ||||||| ||||||| ||||||||| |||| ||||||| | |||||||||| |
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|
| T |
28191337 |
ataaaacaaaacctgattcaatagcatgtttctacacgaggaagtcaatgatttgcagtttgctgcagacaag |
28191265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 28192463 - 28192527
Alignment:
| Q |
157 |
agtagcatgcttctacatgaggaagtcgatgagttgcagtgtaatgcagacaagcgttttaaact |
221 |
Q |
| |
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||||||||||| || || ||||||||| |||| ||||| | |||||||||||| |||||||||| |
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| T |
28192463 |
agtagcatgctcctgcaagaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaact |
28192527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 28246287 - 28246211
Alignment:
| Q |
143 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaatgcagacaagcgttttaaa |
219 |
Q |
| |
|
||||||||||| | | ||||||| || | || ||||||||| |||| |||||| ||| |||||||||| |||||||| |
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| T |
28246287 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaa |
28246211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 46449 - 46373
Alignment:
| Q |
143 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcgatgagttgcagtgtaatgcagacaagcgttttaaa |
219 |
Q |
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||||||||||| | | ||||||| || | || ||||||||| |||| |||||| ||| |||||||||| |||||||| |
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| T |
46449 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaa |
46373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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